Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00410 and PGA1_262p00420 overlap by 11 nucleotides PGA1_262p00420 and PGA1_262p00430 are separated by 186 nucleotides
PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436
_262p00410
PGA1_262p00420: PGA1_262p00420 - Transcriptional regulator/sugar kinase, at 50,426 to 51,640
_262p00420
PGA1_262p00430: PGA1_262p00430 - glucose transporter, periplasmic substrate-binding component (from data) , at 51,827 to 52,852
_262p00430
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-2
-1
0
1 at 49.626 kb on - strand, within PGA1_262p00410 at 49.720 kb on - strand, within PGA1_262p00410 at 49.805 kb on + strand, within PGA1_262p00410 at 49.905 kb on - strand, within PGA1_262p00410 at 49.909 kb on - strand, within PGA1_262p00410 at 50.043 kb on - strand, within PGA1_262p00410 at 50.149 kb on + strand, within PGA1_262p00410 at 50.361 kb on + strand at 50.378 kb on + strand at 50.423 kb on + strand at 50.424 kb on + strand at 50.556 kb on + strand, within PGA1_262p00420 at 50.642 kb on + strand, within PGA1_262p00420 at 50.959 kb on - strand, within PGA1_262p00420 at 51.165 kb on - strand, within PGA1_262p00420 at 51.203 kb on + strand, within PGA1_262p00420 at 51.211 kb on - strand, within PGA1_262p00420 at 51.224 kb on + strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.409 kb on + strand, within PGA1_262p00420 at 51.442 kb on + strand, within PGA1_262p00420 at 51.553 kb on + strand at 51.676 kb on + strand at 51.706 kb on - strand at 51.764 kb on + strand at 51.776 kb on + strand at 51.783 kb on + strand at 51.784 kb on - strand at 51.989 kb on + strand, within PGA1_262p00430 at 51.997 kb on - strand, within PGA1_262p00430 at 52.107 kb on - strand, within PGA1_262p00430 at 52.270 kb on + strand, within PGA1_262p00430 at 52.375 kb on + strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.426 kb on - strand, within PGA1_262p00430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 49,626 - PGA1_262p00410 0.48 +0.4 49,720 - PGA1_262p00410 0.54 -0.5 49,805 + PGA1_262p00410 0.59 -0.3 49,905 - PGA1_262p00410 0.66 -0.3 49,909 - PGA1_262p00410 0.66 -0.3 50,043 - PGA1_262p00410 0.75 -0.2 50,149 + PGA1_262p00410 0.82 +0.8 50,361 + +0.2 50,378 + +0.1 50,423 + -1.3 50,424 + +0.8 50,556 + PGA1_262p00420 0.11 +0.5 50,642 + PGA1_262p00420 0.18 +1.5 50,959 - PGA1_262p00420 0.44 +0.1 51,165 - PGA1_262p00420 0.61 -2.2 51,203 + PGA1_262p00420 0.64 +0.0 51,211 - PGA1_262p00420 0.65 +1.7 51,224 + PGA1_262p00420 0.66 +0.3 51,387 - PGA1_262p00420 0.79 +0.5 51,387 - PGA1_262p00420 0.79 +0.5 51,409 + PGA1_262p00420 0.81 +0.3 51,442 + PGA1_262p00420 0.84 +0.6 51,553 + -0.2 51,676 + +0.2 51,706 - -1.1 51,764 + +0.1 51,776 + -1.1 51,783 + +0.5 51,784 - +0.3 51,989 + PGA1_262p00430 0.16 -0.9 51,997 - PGA1_262p00430 0.17 -0.7 52,107 - PGA1_262p00430 0.27 +0.2 52,270 + PGA1_262p00430 0.43 -0.6 52,375 + PGA1_262p00430 0.53 +0.9 52,383 - PGA1_262p00430 0.54 -0.9 52,383 - PGA1_262p00430 0.54 -0.1 52,383 - PGA1_262p00430 0.54 +0.1 52,383 - PGA1_262p00430 0.54 +0.2 52,426 - PGA1_262p00430 0.58 -1.0
Or see this region's nucleotide sequence