Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00420

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00410 and PGA1_262p00420 overlap by 11 nucleotidesPGA1_262p00420 and PGA1_262p00430 are separated by 186 nucleotides PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436 _262p00410 PGA1_262p00420: PGA1_262p00420 - Transcriptional regulator/sugar kinase, at 50,426 to 51,640 _262p00420 PGA1_262p00430: PGA1_262p00430 - glucose transporter, periplasmic substrate-binding component (from data), at 51,827 to 52,852 _262p00430 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1at 49.626 kb on - strand, within PGA1_262p00410at 49.720 kb on - strand, within PGA1_262p00410at 49.805 kb on + strand, within PGA1_262p00410at 49.905 kb on - strand, within PGA1_262p00410at 49.909 kb on - strand, within PGA1_262p00410at 50.043 kb on - strand, within PGA1_262p00410at 50.149 kb on + strand, within PGA1_262p00410at 50.361 kb on + strandat 50.378 kb on + strandat 50.423 kb on + strandat 50.424 kb on + strandat 50.556 kb on + strand, within PGA1_262p00420at 50.642 kb on + strand, within PGA1_262p00420at 50.959 kb on - strand, within PGA1_262p00420at 51.165 kb on - strand, within PGA1_262p00420at 51.203 kb on + strand, within PGA1_262p00420at 51.211 kb on - strand, within PGA1_262p00420at 51.224 kb on + strand, within PGA1_262p00420at 51.387 kb on - strand, within PGA1_262p00420at 51.387 kb on - strand, within PGA1_262p00420at 51.409 kb on + strand, within PGA1_262p00420at 51.442 kb on + strand, within PGA1_262p00420at 51.553 kb on + strandat 51.676 kb on + strandat 51.706 kb on - strandat 51.764 kb on + strandat 51.776 kb on + strandat 51.783 kb on + strandat 51.784 kb on - strandat 51.989 kb on + strand, within PGA1_262p00430at 51.997 kb on - strand, within PGA1_262p00430at 52.107 kb on - strand, within PGA1_262p00430at 52.270 kb on + strand, within PGA1_262p00430at 52.375 kb on + strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.426 kb on - strand, within PGA1_262p00430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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49,626 - PGA1_262p00410 0.48 +0.4
49,720 - PGA1_262p00410 0.54 -0.5
49,805 + PGA1_262p00410 0.59 -0.3
49,905 - PGA1_262p00410 0.66 -0.3
49,909 - PGA1_262p00410 0.66 -0.3
50,043 - PGA1_262p00410 0.75 -0.2
50,149 + PGA1_262p00410 0.82 +0.8
50,361 + +0.2
50,378 + +0.1
50,423 + -1.3
50,424 + +0.8
50,556 + PGA1_262p00420 0.11 +0.5
50,642 + PGA1_262p00420 0.18 +1.5
50,959 - PGA1_262p00420 0.44 +0.1
51,165 - PGA1_262p00420 0.61 -2.2
51,203 + PGA1_262p00420 0.64 +0.0
51,211 - PGA1_262p00420 0.65 +1.7
51,224 + PGA1_262p00420 0.66 +0.3
51,387 - PGA1_262p00420 0.79 +0.5
51,387 - PGA1_262p00420 0.79 +0.5
51,409 + PGA1_262p00420 0.81 +0.3
51,442 + PGA1_262p00420 0.84 +0.6
51,553 + -0.2
51,676 + +0.2
51,706 - -1.1
51,764 + +0.1
51,776 + -1.1
51,783 + +0.5
51,784 - +0.3
51,989 + PGA1_262p00430 0.16 -0.9
51,997 - PGA1_262p00430 0.17 -0.7
52,107 - PGA1_262p00430 0.27 +0.2
52,270 + PGA1_262p00430 0.43 -0.6
52,375 + PGA1_262p00430 0.53 +0.9
52,383 - PGA1_262p00430 0.54 -0.9
52,383 - PGA1_262p00430 0.54 -0.1
52,383 - PGA1_262p00430 0.54 +0.1
52,383 - PGA1_262p00430 0.54 +0.2
52,426 - PGA1_262p00430 0.58 -1.0

Or see this region's nucleotide sequence