Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00270

Experiment: m.b. A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotidesPGA1_262p00260 and PGA1_262p00270 are separated by 155 nucleotidesPGA1_262p00270 and PGA1_262p00280 are separated by 93 nucleotides PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960 _262p00250 PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510 _262p00260 PGA1_262p00270: PGA1_262p00270 - transcriptional regulator, GntR family, at 30,666 to 31,334 _262p00270 PGA1_262p00280: PGA1_262p00280 - putative proline racemase, at 31,428 to 32,453 _262p00280 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.733 kb on + strand, within PGA1_262p00250at 29.897 kb on + strand, within PGA1_262p00250at 29.901 kb on - strand, within PGA1_262p00250at 29.906 kb on - strand, within PGA1_262p00250at 29.954 kb on + strandat 30.013 kb on + strandat 30.022 kb on - strandat 30.032 kb on - strandat 30.047 kb on + strandat 30.140 kb on + strand, within PGA1_262p00260at 30.142 kb on - strand, within PGA1_262p00260at 30.169 kb on + strand, within PGA1_262p00260at 30.177 kb on - strand, within PGA1_262p00260at 30.178 kb on - strand, within PGA1_262p00260at 30.232 kb on - strand, within PGA1_262p00260at 30.268 kb on + strand, within PGA1_262p00260at 30.268 kb on + strand, within PGA1_262p00260at 30.268 kb on + strand, within PGA1_262p00260at 30.283 kb on - strand, within PGA1_262p00260at 30.343 kb on - strand, within PGA1_262p00260at 30.402 kb on + strand, within PGA1_262p00260at 30.493 kb on + strandat 30.589 kb on + strandat 30.597 kb on - strandat 30.597 kb on - strandat 30.657 kb on + strandat 30.703 kb on + strandat 30.822 kb on + strand, within PGA1_262p00270at 30.989 kb on + strand, within PGA1_262p00270at 31.150 kb on - strand, within PGA1_262p00270at 31.175 kb on - strand, within PGA1_262p00270at 31.200 kb on + strand, within PGA1_262p00270at 31.248 kb on - strand, within PGA1_262p00270at 31.340 kb on + strandat 31.388 kb on + strandat 31.393 kb on + strandat 31.491 kb on + strandat 31.620 kb on + strand, within PGA1_262p00280at 31.620 kb on + strand, within PGA1_262p00280at 31.643 kb on - strand, within PGA1_262p00280at 31.712 kb on + strand, within PGA1_262p00280at 31.755 kb on - strand, within PGA1_262p00280at 31.808 kb on - strand, within PGA1_262p00280at 31.896 kb on + strand, within PGA1_262p00280at 31.918 kb on + strand, within PGA1_262p00280at 31.926 kb on - strand, within PGA1_262p00280at 32.259 kb on - strand, within PGA1_262p00280at 32.262 kb on + strand, within PGA1_262p00280at 32.316 kb on + strand, within PGA1_262p00280at 32.316 kb on + strand, within PGA1_262p00280at 32.325 kb on - strand, within PGA1_262p00280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
remove
29,733 + PGA1_262p00250 0.52 +0.1
29,897 + PGA1_262p00250 0.86 +0.4
29,901 - PGA1_262p00250 0.87 +0.3
29,906 - PGA1_262p00250 0.88 +0.3
29,954 + +0.5
30,013 + +0.5
30,022 - +0.6
30,032 - +0.6
30,047 + +0.8
30,140 + PGA1_262p00260 0.16 +0.0
30,142 - PGA1_262p00260 0.16 +0.6
30,169 + PGA1_262p00260 0.22 +0.6
30,177 - PGA1_262p00260 0.24 +0.0
30,178 - PGA1_262p00260 0.24 +0.1
30,232 - PGA1_262p00260 0.37 -0.5
30,268 + PGA1_262p00260 0.45 -0.0
30,268 + PGA1_262p00260 0.45 -0.9
30,268 + PGA1_262p00260 0.45 -0.5
30,283 - PGA1_262p00260 0.48 -0.1
30,343 - PGA1_262p00260 0.62 -0.0
30,402 + PGA1_262p00260 0.75 -1.0
30,493 + +0.4
30,589 + -0.0
30,597 - -0.2
30,597 - +0.8
30,657 + +0.9
30,703 + -1.9
30,822 + PGA1_262p00270 0.23 +1.2
30,989 + PGA1_262p00270 0.48 -0.0
31,150 - PGA1_262p00270 0.72 +1.6
31,175 - PGA1_262p00270 0.76 -1.5
31,200 + PGA1_262p00270 0.80 +0.1
31,248 - PGA1_262p00270 0.87 -1.6
31,340 + +0.5
31,388 + -0.5
31,393 + +0.2
31,491 + -0.2
31,620 + PGA1_262p00280 0.19 -0.4
31,620 + PGA1_262p00280 0.19 -0.2
31,643 - PGA1_262p00280 0.21 -1.9
31,712 + PGA1_262p00280 0.28 +0.4
31,755 - PGA1_262p00280 0.32 +0.2
31,808 - PGA1_262p00280 0.37 +0.6
31,896 + PGA1_262p00280 0.46 -0.8
31,918 + PGA1_262p00280 0.48 -1.0
31,926 - PGA1_262p00280 0.49 +0.7
32,259 - PGA1_262p00280 0.81 +0.7
32,262 + PGA1_262p00280 0.81 -0.6
32,316 + PGA1_262p00280 0.87 +0.4
32,316 + PGA1_262p00280 0.87 +0.7
32,325 - PGA1_262p00280 0.87 -0.3

Or see this region's nucleotide sequence