Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15720 and PGA1_c15730 are separated by 62 nucleotides PGA1_c15730 and PGA1_c15740 are separated by 2 nucleotides PGA1_c15740 and PGA1_c15750 are separated by 14 nucleotides
PGA1_c15720: PGA1_c15720 - putative glycine cleavage system transcriptional activator, at 1,632,130 to 1,633,041
_c15720
PGA1_c15730: PGA1_c15730 - phosphate regulon transcriptional regulatory protein PhoB, at 1,633,104 to 1,633,793
_c15730
PGA1_c15740: PGA1_c15740 - phosphate transport system protein PhoU, at 1,633,796 to 1,634,506
_c15740
PGA1_c15750: PGA1_c15750 - phosphate import ATP-binding protein PstB, at 1,634,521 to 1,635,318
_c15750
Position (kb)
1633
1634 Strain fitness (log2 ratio)
-1
0
1 at 1632.145 kb on - strand at 1632.242 kb on - strand, within PGA1_c15720 at 1632.289 kb on + strand, within PGA1_c15720 at 1632.347 kb on - strand, within PGA1_c15720 at 1632.402 kb on + strand, within PGA1_c15720 at 1632.422 kb on + strand, within PGA1_c15720 at 1632.422 kb on + strand, within PGA1_c15720 at 1632.446 kb on + strand, within PGA1_c15720 at 1632.461 kb on + strand, within PGA1_c15720 at 1632.525 kb on - strand, within PGA1_c15720 at 1632.535 kb on - strand, within PGA1_c15720 at 1632.550 kb on + strand, within PGA1_c15720 at 1632.607 kb on + strand, within PGA1_c15720 at 1632.680 kb on - strand, within PGA1_c15720 at 1632.705 kb on - strand, within PGA1_c15720 at 1632.726 kb on + strand, within PGA1_c15720 at 1632.783 kb on + strand, within PGA1_c15720 at 1632.844 kb on - strand, within PGA1_c15720 at 1632.914 kb on - strand, within PGA1_c15720 at 1632.935 kb on - strand, within PGA1_c15720 at 1632.964 kb on + strand at 1633.075 kb on - strand at 1633.145 kb on + strand at 1633.196 kb on + strand, within PGA1_c15730 at 1633.239 kb on - strand, within PGA1_c15730 at 1633.291 kb on + strand, within PGA1_c15730 at 1633.357 kb on - strand, within PGA1_c15730 at 1633.462 kb on + strand, within PGA1_c15730 at 1633.470 kb on - strand, within PGA1_c15730 at 1633.480 kb on - strand, within PGA1_c15730 at 1633.523 kb on + strand, within PGA1_c15730 at 1633.595 kb on + strand, within PGA1_c15730 at 1633.595 kb on + strand, within PGA1_c15730 at 1633.603 kb on - strand, within PGA1_c15730 at 1633.603 kb on - strand, within PGA1_c15730 at 1633.673 kb on - strand, within PGA1_c15730 at 1633.794 kb on + strand at 1633.802 kb on - strand at 1633.954 kb on + strand, within PGA1_c15740 at 1634.059 kb on + strand, within PGA1_c15740 at 1634.155 kb on + strand, within PGA1_c15740 at 1634.155 kb on + strand, within PGA1_c15740 at 1634.168 kb on + strand, within PGA1_c15740 at 1634.436 kb on - strand at 1634.653 kb on + strand, within PGA1_c15750 at 1634.687 kb on - strand, within PGA1_c15750 at 1634.745 kb on + strand, within PGA1_c15750 at 1634.750 kb on + strand, within PGA1_c15750 at 1634.755 kb on + strand, within PGA1_c15750 at 1634.758 kb on - strand, within PGA1_c15750 at 1634.758 kb on - strand, within PGA1_c15750 at 1634.758 kb on - strand, within PGA1_c15750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,632,145 - -0.6 1,632,242 - PGA1_c15720 0.12 +0.2 1,632,289 + PGA1_c15720 0.17 +0.6 1,632,347 - PGA1_c15720 0.24 -0.9 1,632,402 + PGA1_c15720 0.30 -0.7 1,632,422 + PGA1_c15720 0.32 +0.6 1,632,422 + PGA1_c15720 0.32 -0.2 1,632,446 + PGA1_c15720 0.35 +0.1 1,632,461 + PGA1_c15720 0.36 +0.1 1,632,525 - PGA1_c15720 0.43 -0.6 1,632,535 - PGA1_c15720 0.44 +0.4 1,632,550 + PGA1_c15720 0.46 +0.8 1,632,607 + PGA1_c15720 0.52 +0.1 1,632,680 - PGA1_c15720 0.60 -1.0 1,632,705 - PGA1_c15720 0.63 +0.1 1,632,726 + PGA1_c15720 0.65 -0.9 1,632,783 + PGA1_c15720 0.72 +0.4 1,632,844 - PGA1_c15720 0.78 -0.2 1,632,914 - PGA1_c15720 0.86 +0.0 1,632,935 - PGA1_c15720 0.88 +0.6 1,632,964 + +0.9 1,633,075 - -0.2 1,633,145 + +0.2 1,633,196 + PGA1_c15730 0.13 +0.4 1,633,239 - PGA1_c15730 0.20 +0.3 1,633,291 + PGA1_c15730 0.27 +1.3 1,633,357 - PGA1_c15730 0.37 -0.2 1,633,462 + PGA1_c15730 0.52 +1.2 1,633,470 - PGA1_c15730 0.53 +0.4 1,633,480 - PGA1_c15730 0.54 +0.4 1,633,523 + PGA1_c15730 0.61 +0.9 1,633,595 + PGA1_c15730 0.71 +0.3 1,633,595 + PGA1_c15730 0.71 -1.2 1,633,603 - PGA1_c15730 0.72 +0.5 1,633,603 - PGA1_c15730 0.72 +0.4 1,633,673 - PGA1_c15730 0.82 +1.1 1,633,794 + +0.5 1,633,802 - -0.4 1,633,954 + PGA1_c15740 0.22 -0.4 1,634,059 + PGA1_c15740 0.37 +1.1 1,634,155 + PGA1_c15740 0.50 -1.5 1,634,155 + PGA1_c15740 0.50 +0.5 1,634,168 + PGA1_c15740 0.52 -0.3 1,634,436 - -0.4 1,634,653 + PGA1_c15750 0.17 -1.0 1,634,687 - PGA1_c15750 0.21 -0.5 1,634,745 + PGA1_c15750 0.28 +0.1 1,634,750 + PGA1_c15750 0.29 +0.6 1,634,755 + PGA1_c15750 0.29 -0.8 1,634,758 - PGA1_c15750 0.30 +0.3 1,634,758 - PGA1_c15750 0.30 -0.1 1,634,758 - PGA1_c15750 0.30 -0.8
Or see this region's nucleotide sequence