Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1421 and HP15_1422 overlap by 4 nucleotides HP15_1422 and HP15_1423 are separated by 88 nucleotides HP15_1423 and HP15_1424 are separated by 64 nucleotides HP15_1424 and HP15_1425 are separated by 113 nucleotides
HP15_1421: HP15_1421 - ABC transporter, membrane spanning protein, at 1,504,715 to 1,505,368
_1421
HP15_1422: HP15_1422 - amino acid ABC transporter ATP-binding protein, at 1,505,365 to 1,506,087
_1422
HP15_1423: HP15_1423 - conserved hypothetical protein, secreted, at 1,506,176 to 1,506,568
_1423
HP15_1424: HP15_1424 - short-chain dehydrogenase/reductase SDR, at 1,506,633 to 1,507,334
_1424
HP15_1425: HP15_1425 - conserved hypothetical protein, secreted, at 1,507,448 to 1,507,876
_1425
Position (kb)
1506
1507 Strain fitness (log2 ratio)
-1
0
1 at 1505.181 kb on + strand, within HP15_1421 at 1505.203 kb on + strand, within HP15_1421 at 1505.518 kb on - strand, within HP15_1422 at 1505.549 kb on + strand, within HP15_1422 at 1505.644 kb on + strand, within HP15_1422 at 1505.815 kb on - strand, within HP15_1422 at 1505.820 kb on - strand, within HP15_1422 at 1505.867 kb on + strand, within HP15_1422 at 1505.875 kb on - strand, within HP15_1422 at 1505.887 kb on + strand, within HP15_1422 at 1505.926 kb on + strand, within HP15_1422 at 1505.964 kb on + strand, within HP15_1422 at 1506.198 kb on + strand at 1506.198 kb on + strand at 1506.316 kb on - strand, within HP15_1423 at 1506.335 kb on + strand, within HP15_1423 at 1506.335 kb on + strand, within HP15_1423 at 1506.357 kb on - strand, within HP15_1423 at 1506.374 kb on + strand, within HP15_1423 at 1506.437 kb on - strand, within HP15_1423 at 1506.473 kb on - strand, within HP15_1423 at 1506.636 kb on + strand at 1506.702 kb on - strand at 1506.771 kb on - strand, within HP15_1424 at 1506.827 kb on + strand, within HP15_1424 at 1506.849 kb on + strand, within HP15_1424 at 1507.114 kb on + strand, within HP15_1424 at 1507.122 kb on - strand, within HP15_1424 at 1507.122 kb on - strand, within HP15_1424 at 1507.151 kb on + strand, within HP15_1424 at 1507.151 kb on + strand, within HP15_1424 at 1507.337 kb on + strand at 1507.419 kb on + strand at 1507.422 kb on - strand at 1507.438 kb on + strand at 1507.438 kb on + strand at 1507.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 1,505,181 + HP15_1421 0.71 +0.1 1,505,203 + HP15_1421 0.75 +0.2 1,505,518 - HP15_1422 0.21 -0.6 1,505,549 + HP15_1422 0.25 -0.4 1,505,644 + HP15_1422 0.39 +0.3 1,505,815 - HP15_1422 0.62 -0.3 1,505,820 - HP15_1422 0.63 +0.2 1,505,867 + HP15_1422 0.69 -0.1 1,505,875 - HP15_1422 0.71 +1.4 1,505,887 + HP15_1422 0.72 -0.1 1,505,926 + HP15_1422 0.78 -0.2 1,505,964 + HP15_1422 0.83 -1.4 1,506,198 + -0.2 1,506,198 + -0.2 1,506,316 - HP15_1423 0.36 +0.1 1,506,335 + HP15_1423 0.40 +0.1 1,506,335 + HP15_1423 0.40 -1.1 1,506,357 - HP15_1423 0.46 -1.4 1,506,374 + HP15_1423 0.50 +0.2 1,506,437 - HP15_1423 0.66 -0.3 1,506,473 - HP15_1423 0.76 -0.0 1,506,636 + +0.2 1,506,702 - -0.2 1,506,771 - HP15_1424 0.20 -0.0 1,506,827 + HP15_1424 0.28 -0.4 1,506,849 + HP15_1424 0.31 -0.8 1,507,114 + HP15_1424 0.69 +0.4 1,507,122 - HP15_1424 0.70 -0.1 1,507,122 - HP15_1424 0.70 +0.0 1,507,151 + HP15_1424 0.74 -0.7 1,507,151 + HP15_1424 0.74 -0.2 1,507,337 + +0.1 1,507,419 + -0.9 1,507,422 - -0.5 1,507,438 + -0.0 1,507,438 + -0.0 1,507,446 - +0.0
Or see this region's nucleotide sequence