Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14710

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14690 and PGA1_c14700 are separated by 51 nucleotidesPGA1_c14700 and PGA1_c14710 are separated by 216 nucleotidesPGA1_c14710 and PGA1_c14720 are separated by 73 nucleotidesPGA1_c14720 and PGA1_c14730 are separated by 77 nucleotides PGA1_c14690: PGA1_c14690 - putative hydrolase, at 1,523,207 to 1,524,349 _c14690 PGA1_c14700: PGA1_c14700 - hypothetical protein, at 1,524,401 to 1,524,727 _c14700 PGA1_c14710: PGA1_c14710 - hypoxanthine-guanine phosphoribosyltransferase Hpt, at 1,524,944 to 1,525,489 _c14710 PGA1_c14720: PGA1_c14720 - Oligoketide cyclase/lipid transport protein, at 1,525,563 to 1,526,009 _c14720 PGA1_c14730: PGA1_c14730 - ammonia channel, at 1,526,087 to 1,527,268 _c14730 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -1 0 1at 1523.948 kb on + strand, within PGA1_c14690at 1523.958 kb on + strand, within PGA1_c14690at 1524.018 kb on - strand, within PGA1_c14690at 1524.047 kb on + strand, within PGA1_c14690at 1524.061 kb on - strand, within PGA1_c14690at 1524.169 kb on + strand, within PGA1_c14690at 1524.175 kb on + strand, within PGA1_c14690at 1524.175 kb on + strand, within PGA1_c14690at 1524.175 kb on + strand, within PGA1_c14690at 1524.427 kb on - strandat 1524.460 kb on - strand, within PGA1_c14700at 1524.463 kb on - strand, within PGA1_c14700at 1524.500 kb on + strand, within PGA1_c14700at 1524.508 kb on - strand, within PGA1_c14700at 1524.620 kb on + strand, within PGA1_c14700at 1524.653 kb on - strand, within PGA1_c14700at 1524.699 kb on - strandat 1524.711 kb on + strandat 1524.764 kb on + strandat 1524.828 kb on - strandat 1524.861 kb on - strandat 1525.050 kb on - strand, within PGA1_c14710at 1525.128 kb on - strand, within PGA1_c14710at 1525.146 kb on + strand, within PGA1_c14710at 1525.170 kb on - strand, within PGA1_c14710at 1525.378 kb on + strand, within PGA1_c14710at 1525.421 kb on - strand, within PGA1_c14710at 1525.559 kb on + strandat 1525.592 kb on + strandat 1525.600 kb on - strandat 1525.610 kb on - strand, within PGA1_c14720at 1525.817 kb on - strand, within PGA1_c14720at 1525.998 kb on + strandat 1526.016 kb on - strandat 1526.083 kb on + strandat 1526.091 kb on - strandat 1526.096 kb on - strandat 1526.124 kb on + strandat 1526.132 kb on - strandat 1526.377 kb on + strand, within PGA1_c14730

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,523,948 + PGA1_c14690 0.65 -0.2
1,523,958 + PGA1_c14690 0.66 -1.0
1,524,018 - PGA1_c14690 0.71 -0.3
1,524,047 + PGA1_c14690 0.73 +0.0
1,524,061 - PGA1_c14690 0.75 -0.0
1,524,169 + PGA1_c14690 0.84 -0.4
1,524,175 + PGA1_c14690 0.85 +0.4
1,524,175 + PGA1_c14690 0.85 +0.7
1,524,175 + PGA1_c14690 0.85 -0.3
1,524,427 - +0.1
1,524,460 - PGA1_c14700 0.18 -0.2
1,524,463 - PGA1_c14700 0.19 -0.6
1,524,500 + PGA1_c14700 0.30 +0.7
1,524,508 - PGA1_c14700 0.33 +0.6
1,524,620 + PGA1_c14700 0.67 +0.4
1,524,653 - PGA1_c14700 0.77 +0.2
1,524,699 - +0.1
1,524,711 + +0.4
1,524,764 + +0.5
1,524,828 - +0.5
1,524,861 - -1.4
1,525,050 - PGA1_c14710 0.19 +0.7
1,525,128 - PGA1_c14710 0.34 +0.2
1,525,146 + PGA1_c14710 0.37 -0.8
1,525,170 - PGA1_c14710 0.41 +1.2
1,525,378 + PGA1_c14710 0.79 -0.2
1,525,421 - PGA1_c14710 0.87 +0.4
1,525,559 + -1.7
1,525,592 + -0.9
1,525,600 - +0.2
1,525,610 - PGA1_c14720 0.11 -1.0
1,525,817 - PGA1_c14720 0.57 -1.7
1,525,998 + +0.8
1,526,016 - +0.7
1,526,083 + +0.2
1,526,091 - -0.2
1,526,096 - +0.7
1,526,124 + -0.1
1,526,132 - +1.2
1,526,377 + PGA1_c14730 0.25 +0.3

Or see this region's nucleotide sequence