Experiment: MoLS4 with L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2397 and DVU2398 are separated by 206 nucleotides DVU2398 and DVU2399 are separated by 257 nucleotides DVU2399 and DVU2400 overlap by 8 nucleotides
DVU2397: DVU2397 - hypothetical protein (TIGR), at 2,501,252 to 2,501,995
DVU2397
DVU2398: DVU2398 - conserved hypothetical protein (TIGR), at 2,502,202 to 2,502,693
DVU2398
DVU2399: DVU2399 - hydrogenase, putative (TIGR), at 2,502,951 to 2,503,838
DVU2399
DVU2400: DVU2400 - hydrogenase, putative (TIGR), at 2,503,831 to 2,504,913
DVU2400
Position (kb)
2502
2503
2504 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2502.140 kb on - strand at 2502.254 kb on - strand, within DVU2398 at 2502.268 kb on - strand, within DVU2398 at 2502.285 kb on - strand, within DVU2398 at 2502.325 kb on + strand, within DVU2398 at 2502.410 kb on + strand, within DVU2398 at 2502.425 kb on + strand, within DVU2398 at 2502.512 kb on - strand, within DVU2398 at 2502.542 kb on + strand, within DVU2398 at 2502.613 kb on - strand, within DVU2398 at 2502.624 kb on + strand, within DVU2398 at 2502.624 kb on + strand, within DVU2398 at 2502.656 kb on + strand at 2502.689 kb on + strand at 2502.745 kb on - strand at 2502.779 kb on + strand at 2502.866 kb on - strand at 2502.932 kb on + strand at 2502.937 kb on + strand at 2502.937 kb on + strand at 2502.945 kb on - strand at 2502.945 kb on - strand at 2502.980 kb on + strand at 2502.995 kb on - strand at 2502.995 kb on - strand at 2502.995 kb on - strand at 2503.081 kb on + strand, within DVU2399 at 2503.177 kb on + strand, within DVU2399 at 2503.185 kb on - strand, within DVU2399 at 2503.330 kb on - strand, within DVU2399 at 2503.330 kb on - strand, within DVU2399 at 2503.347 kb on - strand, within DVU2399 at 2503.347 kb on - strand, within DVU2399 at 2503.349 kb on + strand, within DVU2399 at 2503.349 kb on + strand, within DVU2399 at 2503.374 kb on + strand, within DVU2399 at 2503.725 kb on + strand, within DVU2399 at 2503.735 kb on + strand, within DVU2399 at 2503.735 kb on + strand, within DVU2399 at 2503.735 kb on + strand, within DVU2399 at 2503.743 kb on - strand, within DVU2399 at 2503.771 kb on - strand at 2503.781 kb on + strand at 2504.030 kb on - strand, within DVU2400 at 2504.058 kb on + strand, within DVU2400 at 2504.267 kb on - strand, within DVU2400 at 2504.452 kb on + strand, within DVU2400 at 2504.491 kb on - strand, within DVU2400 at 2504.545 kb on - strand, within DVU2400 at 2504.668 kb on + strand, within DVU2400 at 2504.676 kb on - strand, within DVU2400 at 2504.759 kb on - strand, within DVU2400
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N) remove 2,502,140 - -0.3 2,502,254 - DVU2398 0.11 -1.1 2,502,268 - DVU2398 0.13 +0.6 2,502,285 - DVU2398 0.17 -0.1 2,502,325 + DVU2398 0.25 -1.6 2,502,410 + DVU2398 0.42 -1.4 2,502,425 + DVU2398 0.45 +1.0 2,502,512 - DVU2398 0.63 +0.1 2,502,542 + DVU2398 0.69 +0.7 2,502,613 - DVU2398 0.84 +0.1 2,502,624 + DVU2398 0.86 -0.2 2,502,624 + DVU2398 0.86 -0.2 2,502,656 + -1.2 2,502,689 + -0.7 2,502,745 - -0.3 2,502,779 + +0.0 2,502,866 - -1.0 2,502,932 + -1.3 2,502,937 + -0.3 2,502,937 + -1.0 2,502,945 - -0.2 2,502,945 - -0.7 2,502,980 + -1.2 2,502,995 - -1.1 2,502,995 - -1.3 2,502,995 - -0.3 2,503,081 + DVU2399 0.15 -1.3 2,503,177 + DVU2399 0.25 -1.6 2,503,185 - DVU2399 0.26 -2.0 2,503,330 - DVU2399 0.43 -1.5 2,503,330 - DVU2399 0.43 -0.3 2,503,347 - DVU2399 0.45 +0.1 2,503,347 - DVU2399 0.45 -1.2 2,503,349 + DVU2399 0.45 -2.0 2,503,349 + DVU2399 0.45 -1.9 2,503,374 + DVU2399 0.48 -2.6 2,503,725 + DVU2399 0.87 -0.0 2,503,735 + DVU2399 0.88 -1.8 2,503,735 + DVU2399 0.88 -0.3 2,503,735 + DVU2399 0.88 -1.9 2,503,743 - DVU2399 0.89 -0.8 2,503,771 - -1.8 2,503,781 + +1.1 2,504,030 - DVU2400 0.18 -4.8 2,504,058 + DVU2400 0.21 -2.6 2,504,267 - DVU2400 0.40 -0.4 2,504,452 + DVU2400 0.57 -0.4 2,504,491 - DVU2400 0.61 -1.9 2,504,545 - DVU2400 0.66 -2.0 2,504,668 + DVU2400 0.77 -0.8 2,504,676 - DVU2400 0.78 -0.3 2,504,759 - DVU2400 0.86 -1.4
Or see this region's nucleotide sequence