Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1807

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmgtE and nadC are separated by 143 nucleotidesnadC and nadA overlap by 4 nucleotides DVU1806: mgtE - magnesium transporter (TIGR), at 1,870,156 to 1,871,526 mgtE DVU1807: nadC - nicotinate-nucleotide pyrophosphorylase (TIGR), at 1,871,670 to 1,872,557 nadC DVU1808: nadA - quinolinate synthetase complex, subunit A (TIGR), at 1,872,554 to 1,873,630 nadA Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -3 -2 -1 0 1at 1870.722 kb on - strand, within mgtEat 1870.723 kb on - strand, within mgtEat 1870.861 kb on - strand, within mgtEat 1870.861 kb on - strand, within mgtEat 1871.187 kb on - strand, within mgtEat 1871.187 kb on - strand, within mgtEat 1871.237 kb on + strand, within mgtEat 1871.277 kb on - strand, within mgtEat 1871.391 kb on + strandat 1871.414 kb on - strandat 1871.494 kb on + strandat 1871.544 kb on + strandat 1871.586 kb on + strandat 1871.588 kb on - strandat 1871.604 kb on + strandat 1871.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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1,870,722 - mgtE DVU1806 0.41 -2.9
1,870,723 - mgtE DVU1806 0.41 -1.5
1,870,861 - mgtE DVU1806 0.51 +0.1
1,870,861 - mgtE DVU1806 0.51 -0.7
1,871,187 - mgtE DVU1806 0.75 -1.6
1,871,187 - mgtE DVU1806 0.75 -2.3
1,871,237 + mgtE DVU1806 0.79 -2.1
1,871,277 - mgtE DVU1806 0.82 -1.3
1,871,391 + -2.7
1,871,414 - -1.2
1,871,494 + -2.1
1,871,544 + -0.2
1,871,586 + -0.2
1,871,588 - -0.7
1,871,604 + -0.2
1,871,646 - +0.2

Or see this region's nucleotide sequence