Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.990.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.989.1 and Xcc-8004.990.1 are separated by 130 nucleotidesXcc-8004.990.1 and Xcc-8004.991.1 are separated by 98 nucleotides Xcc-8004.989.1: Xcc-8004.989.1 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 937,622 to 938,545 Xcc-8004.989.1 Xcc-8004.990.1: Xcc-8004.990.1 - FIG01210796: hypothetical protein, at 938,676 to 939,014 Xcc-8004.990.1 Xcc-8004.991.1: Xcc-8004.991.1 - hypothetical protein, at 939,113 to 940,057 Xcc-8004.991.1 Position (kb) 938 939 940Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 937.757 kb on + strand, within Xcc-8004.989.1at 937.786 kb on + strand, within Xcc-8004.989.1at 937.786 kb on + strand, within Xcc-8004.989.1at 937.787 kb on - strand, within Xcc-8004.989.1at 937.943 kb on + strand, within Xcc-8004.989.1at 938.096 kb on + strand, within Xcc-8004.989.1at 938.097 kb on - strand, within Xcc-8004.989.1at 938.311 kb on + strand, within Xcc-8004.989.1at 938.330 kb on + strand, within Xcc-8004.989.1at 938.339 kb on + strand, within Xcc-8004.989.1at 938.420 kb on + strand, within Xcc-8004.989.1at 938.421 kb on - strand, within Xcc-8004.989.1at 938.421 kb on - strand, within Xcc-8004.989.1at 938.476 kb on + strandat 938.723 kb on + strand, within Xcc-8004.990.1at 938.723 kb on + strand, within Xcc-8004.990.1at 938.723 kb on + strand, within Xcc-8004.990.1at 938.723 kb on + strand, within Xcc-8004.990.1at 938.723 kb on + strand, within Xcc-8004.990.1at 938.723 kb on + strand, within Xcc-8004.990.1at 938.724 kb on - strand, within Xcc-8004.990.1at 938.724 kb on - strand, within Xcc-8004.990.1at 938.724 kb on - strand, within Xcc-8004.990.1at 939.001 kb on + strandat 939.001 kb on + strandat 939.001 kb on + strandat 939.049 kb on + strandat 939.049 kb on + strandat 939.049 kb on + strandat 939.050 kb on - strandat 939.050 kb on - strandat 939.114 kb on + strandat 939.114 kb on + strandat 939.292 kb on - strand, within Xcc-8004.991.1at 939.302 kb on + strand, within Xcc-8004.991.1at 939.303 kb on - strand, within Xcc-8004.991.1at 939.513 kb on + strand, within Xcc-8004.991.1at 939.513 kb on + strand, within Xcc-8004.991.1at 939.513 kb on + strand, within Xcc-8004.991.1at 939.514 kb on - strand, within Xcc-8004.991.1at 939.516 kb on + strand, within Xcc-8004.991.1at 939.517 kb on - strand, within Xcc-8004.991.1at 939.537 kb on + strand, within Xcc-8004.991.1at 939.537 kb on + strand, within Xcc-8004.991.1at 939.538 kb on - strand, within Xcc-8004.991.1at 939.543 kb on + strand, within Xcc-8004.991.1at 939.543 kb on + strand, within Xcc-8004.991.1at 939.543 kb on + strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.544 kb on - strand, within Xcc-8004.991.1at 939.615 kb on - strand, within Xcc-8004.991.1at 939.721 kb on - strand, within Xcc-8004.991.1at 939.721 kb on - strand, within Xcc-8004.991.1at 939.721 kb on - strand, within Xcc-8004.991.1at 939.765 kb on - strand, within Xcc-8004.991.1at 939.787 kb on + strand, within Xcc-8004.991.1at 939.787 kb on + strand, within Xcc-8004.991.1at 939.787 kb on + strand, within Xcc-8004.991.1at 939.788 kb on - strand, within Xcc-8004.991.1at 939.810 kb on + strand, within Xcc-8004.991.1at 939.811 kb on - strand, within Xcc-8004.991.1at 939.837 kb on - strand, within Xcc-8004.991.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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937,757 + Xcc-8004.989.1 0.15 -1.6
937,786 + Xcc-8004.989.1 0.18 +0.2
937,786 + Xcc-8004.989.1 0.18 -0.0
937,787 - Xcc-8004.989.1 0.18 -1.0
937,943 + Xcc-8004.989.1 0.35 -0.3
938,096 + Xcc-8004.989.1 0.51 +0.0
938,097 - Xcc-8004.989.1 0.51 +1.3
938,311 + Xcc-8004.989.1 0.75 +0.4
938,330 + Xcc-8004.989.1 0.77 +0.3
938,339 + Xcc-8004.989.1 0.78 -1.7
938,420 + Xcc-8004.989.1 0.86 -0.9
938,421 - Xcc-8004.989.1 0.86 -1.1
938,421 - Xcc-8004.989.1 0.86 +0.7
938,476 + +1.8
938,723 + Xcc-8004.990.1 0.14 -0.3
938,723 + Xcc-8004.990.1 0.14 -0.5
938,723 + Xcc-8004.990.1 0.14 -1.8
938,723 + Xcc-8004.990.1 0.14 -0.7
938,723 + Xcc-8004.990.1 0.14 -0.8
938,723 + Xcc-8004.990.1 0.14 -1.5
938,724 - Xcc-8004.990.1 0.14 -2.0
938,724 - Xcc-8004.990.1 0.14 -0.2
938,724 - Xcc-8004.990.1 0.14 -0.5
939,001 + +1.2
939,001 + +1.6
939,001 + +0.8
939,049 + -2.8
939,049 + -1.2
939,049 + +0.2
939,050 - -2.2
939,050 - -2.6
939,114 + -1.3
939,114 + +2.2
939,292 - Xcc-8004.991.1 0.19 -2.2
939,302 + Xcc-8004.991.1 0.20 -0.7
939,303 - Xcc-8004.991.1 0.20 -0.6
939,513 + Xcc-8004.991.1 0.42 -1.7
939,513 + Xcc-8004.991.1 0.42 +1.0
939,513 + Xcc-8004.991.1 0.42 -0.7
939,514 - Xcc-8004.991.1 0.42 -0.9
939,516 + Xcc-8004.991.1 0.43 +0.6
939,517 - Xcc-8004.991.1 0.43 +1.0
939,537 + Xcc-8004.991.1 0.45 +0.6
939,537 + Xcc-8004.991.1 0.45 +0.1
939,538 - Xcc-8004.991.1 0.45 -0.6
939,543 + Xcc-8004.991.1 0.46 +1.5
939,543 + Xcc-8004.991.1 0.46 -0.9
939,543 + Xcc-8004.991.1 0.46 -0.1
939,544 - Xcc-8004.991.1 0.46 -1.2
939,544 - Xcc-8004.991.1 0.46 +0.1
939,544 - Xcc-8004.991.1 0.46 +1.1
939,544 - Xcc-8004.991.1 0.46 -2.1
939,544 - Xcc-8004.991.1 0.46 -1.1
939,544 - Xcc-8004.991.1 0.46 -0.5
939,544 - Xcc-8004.991.1 0.46 -0.2
939,544 - Xcc-8004.991.1 0.46 -0.5
939,615 - Xcc-8004.991.1 0.53 +1.0
939,721 - Xcc-8004.991.1 0.64 -1.1
939,721 - Xcc-8004.991.1 0.64 +0.4
939,721 - Xcc-8004.991.1 0.64 -2.1
939,765 - Xcc-8004.991.1 0.69 +0.1
939,787 + Xcc-8004.991.1 0.71 -0.7
939,787 + Xcc-8004.991.1 0.71 +0.4
939,787 + Xcc-8004.991.1 0.71 +0.5
939,788 - Xcc-8004.991.1 0.71 +1.5
939,810 + Xcc-8004.991.1 0.74 -0.2
939,811 - Xcc-8004.991.1 0.74 -0.3
939,837 - Xcc-8004.991.1 0.77 +0.4

Or see this region's nucleotide sequence