Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.862.1 and Xcc-8004.863.1 are separated by 104 nucleotides Xcc-8004.863.1 and Xcc-8004.864.1 are separated by 86 nucleotides Xcc-8004.864.1 and Xcc-8004.866.1 are separated by 198 nucleotides
Xcc-8004.862.1: Xcc-8004.862.1 - Hydrolase, haloacid dehalogenase-like family, at 812,951 to 813,574
Xcc-8004.862.1
Xcc-8004.863.1: Xcc-8004.863.1 - hypothetical protein, at 813,679 to 813,891
Xcc-8004.863.1
Xcc-8004.864.1: Xcc-8004.864.1 - hypothetical protein, at 813,978 to 814,214
Xcc-8004.864.1
Xcc-8004.866.1: Xcc-8004.866.1 - Methanol dehydrogenase large subunit protein (EC 1.1.99.8), at 814,413 to 816,152
Xcc-8004.866.1
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 813.010 kb on - strand at 813.383 kb on + strand, within Xcc-8004.862.1 at 813.383 kb on + strand, within Xcc-8004.862.1 at 813.384 kb on - strand, within Xcc-8004.862.1 at 813.647 kb on - strand at 813.647 kb on - strand at 813.647 kb on - strand at 813.654 kb on - strand at 813.681 kb on - strand at 813.686 kb on + strand at 813.686 kb on + strand at 813.686 kb on + strand at 813.687 kb on - strand at 813.687 kb on - strand at 813.687 kb on - strand at 813.893 kb on + strand at 813.893 kb on + strand at 813.893 kb on + strand at 814.072 kb on + strand, within Xcc-8004.864.1 at 814.072 kb on + strand, within Xcc-8004.864.1 at 814.154 kb on + strand, within Xcc-8004.864.1 at 814.154 kb on + strand, within Xcc-8004.864.1 at 814.154 kb on + strand, within Xcc-8004.864.1 at 814.154 kb on + strand, within Xcc-8004.864.1 at 814.154 kb on + strand, within Xcc-8004.864.1 at 814.154 kb on + strand, within Xcc-8004.864.1 at 814.155 kb on - strand, within Xcc-8004.864.1 at 814.155 kb on - strand, within Xcc-8004.864.1 at 814.155 kb on - strand, within Xcc-8004.864.1 at 814.155 kb on - strand, within Xcc-8004.864.1 at 814.206 kb on + strand at 814.307 kb on + strand at 814.307 kb on + strand at 814.308 kb on - strand at 814.574 kb on + strand at 814.614 kb on - strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.773 kb on + strand, within Xcc-8004.866.1 at 814.774 kb on - strand, within Xcc-8004.866.1 at 814.774 kb on - strand, within Xcc-8004.866.1 at 814.774 kb on - strand, within Xcc-8004.866.1 at 814.774 kb on - strand, within Xcc-8004.866.1 at 814.803 kb on + strand, within Xcc-8004.866.1 at 814.804 kb on - strand, within Xcc-8004.866.1 at 814.804 kb on - strand, within Xcc-8004.866.1 at 814.854 kb on + strand, within Xcc-8004.866.1 at 814.854 kb on + strand, within Xcc-8004.866.1 at 814.855 kb on - strand, within Xcc-8004.866.1 at 814.923 kb on + strand, within Xcc-8004.866.1 at 815.127 kb on + strand, within Xcc-8004.866.1 at 815.144 kb on + strand, within Xcc-8004.866.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 813,010 - +0.2 813,383 + Xcc-8004.862.1 0.69 +2.0 813,383 + Xcc-8004.862.1 0.69 +0.3 813,384 - Xcc-8004.862.1 0.69 +0.7 813,647 - +0.3 813,647 - +1.9 813,647 - +0.9 813,654 - +0.2 813,681 - -0.7 813,686 + +0.9 813,686 + -0.6 813,686 + -2.5 813,687 - -1.3 813,687 - -0.4 813,687 - -0.2 813,893 + -0.5 813,893 + +0.1 813,893 + -1.0 814,072 + Xcc-8004.864.1 0.40 -1.5 814,072 + Xcc-8004.864.1 0.40 -1.1 814,154 + Xcc-8004.864.1 0.74 +0.2 814,154 + Xcc-8004.864.1 0.74 +0.1 814,154 + Xcc-8004.864.1 0.74 +1.0 814,154 + Xcc-8004.864.1 0.74 -2.3 814,154 + Xcc-8004.864.1 0.74 +0.9 814,154 + Xcc-8004.864.1 0.74 -0.9 814,155 - Xcc-8004.864.1 0.75 -0.8 814,155 - Xcc-8004.864.1 0.75 -1.7 814,155 - Xcc-8004.864.1 0.75 -0.1 814,155 - Xcc-8004.864.1 0.75 -0.5 814,206 + -0.0 814,307 + -2.1 814,307 + +1.7 814,308 - +0.4 814,574 + +2.2 814,614 - Xcc-8004.866.1 0.12 -0.6 814,773 + Xcc-8004.866.1 0.21 -0.9 814,773 + Xcc-8004.866.1 0.21 +0.1 814,773 + Xcc-8004.866.1 0.21 +0.1 814,773 + Xcc-8004.866.1 0.21 -1.6 814,773 + Xcc-8004.866.1 0.21 -0.7 814,773 + Xcc-8004.866.1 0.21 +0.4 814,773 + Xcc-8004.866.1 0.21 -1.6 814,774 - Xcc-8004.866.1 0.21 -0.0 814,774 - Xcc-8004.866.1 0.21 +1.7 814,774 - Xcc-8004.866.1 0.21 -1.0 814,774 - Xcc-8004.866.1 0.21 +0.0 814,803 + Xcc-8004.866.1 0.22 -0.3 814,804 - Xcc-8004.866.1 0.22 -0.4 814,804 - Xcc-8004.866.1 0.22 +0.9 814,854 + Xcc-8004.866.1 0.25 -0.6 814,854 + Xcc-8004.866.1 0.25 -0.7 814,855 - Xcc-8004.866.1 0.25 +4.3 814,923 + Xcc-8004.866.1 0.29 +1.2 815,127 + Xcc-8004.866.1 0.41 -0.3 815,144 + Xcc-8004.866.1 0.42 -0.0
Or see this region's nucleotide sequence