Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.574.1 and Xcc-8004.576.1 are separated by 11 nucleotides Xcc-8004.576.1 and Xcc-8004.577.1 are separated by 489 nucleotides
Xcc-8004.574.1: Xcc-8004.574.1 - Di-/tripeptide transporter, at 533,234 to 534,754
Xcc-8004.574.1
Xcc-8004.576.1: Xcc-8004.576.1 - FIG01210281: hypothetical protein, at 534,766 to 535,356
Xcc-8004.576.1
Xcc-8004.577.1: Xcc-8004.577.1 - Transcriptional regulator, MarR family, at 535,846 to 536,415
Xcc-8004.577.1
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.825 kb on + strand, within Xcc-8004.574.1 at 533.826 kb on - strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.462 kb on - strand, within Xcc-8004.574.1 at 534.462 kb on - strand, within Xcc-8004.574.1 at 534.663 kb on - strand at 534.664 kb on + strand at 534.664 kb on + strand at 534.664 kb on + strand at 534.665 kb on - strand at 534.665 kb on - strand at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.971 kb on - strand, within Xcc-8004.576.1 at 534.971 kb on - strand, within Xcc-8004.576.1 at 535.300 kb on + strand at 535.300 kb on + strand at 535.301 kb on - strand at 535.376 kb on + strand at 535.376 kb on + strand at 535.376 kb on + strand at 535.504 kb on - strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.678 kb on - strand at 535.678 kb on - strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.728 kb on - strand at 535.728 kb on - strand at 535.985 kb on + strand, within Xcc-8004.577.1 at 535.986 kb on - strand, within Xcc-8004.577.1 at 535.986 kb on - strand, within Xcc-8004.577.1 at 535.986 kb on - strand, within Xcc-8004.577.1 at 535.986 kb on - strand, within Xcc-8004.577.1 at 535.986 kb on - strand, within Xcc-8004.577.1 at 535.986 kb on - strand, within Xcc-8004.577.1 at 536.153 kb on + strand, within Xcc-8004.577.1 at 536.153 kb on + strand, within Xcc-8004.577.1 at 536.153 kb on + strand, within Xcc-8004.577.1 at 536.153 kb on + strand, within Xcc-8004.577.1 at 536.154 kb on - strand, within Xcc-8004.577.1 at 536.154 kb on - strand, within Xcc-8004.577.1 at 536.201 kb on + strand, within Xcc-8004.577.1 at 536.201 kb on + strand, within Xcc-8004.577.1 at 536.202 kb on - strand, within Xcc-8004.577.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 533,825 + Xcc-8004.574.1 0.39 -0.6 533,826 - Xcc-8004.574.1 0.39 -1.1 533,993 + Xcc-8004.574.1 0.50 -0.2 533,993 + Xcc-8004.574.1 0.50 -0.4 533,993 + Xcc-8004.574.1 0.50 -2.0 533,993 + Xcc-8004.574.1 0.50 -1.2 533,994 - Xcc-8004.574.1 0.50 -0.2 533,994 - Xcc-8004.574.1 0.50 -0.4 533,994 - Xcc-8004.574.1 0.50 -2.4 533,994 - Xcc-8004.574.1 0.50 -0.8 534,461 + Xcc-8004.574.1 0.81 -0.8 534,461 + Xcc-8004.574.1 0.81 -0.5 534,461 + Xcc-8004.574.1 0.81 -1.1 534,461 + Xcc-8004.574.1 0.81 -0.5 534,462 - Xcc-8004.574.1 0.81 -1.0 534,462 - Xcc-8004.574.1 0.81 +0.7 534,663 - +0.0 534,664 + -0.4 534,664 + -0.8 534,664 + -1.3 534,665 - -1.8 534,665 - -2.1 534,970 + Xcc-8004.576.1 0.35 -1.2 534,970 + Xcc-8004.576.1 0.35 -1.0 534,970 + Xcc-8004.576.1 0.35 -0.7 534,971 - Xcc-8004.576.1 0.35 -2.7 534,971 - Xcc-8004.576.1 0.35 +0.4 535,300 + -0.8 535,300 + +0.2 535,301 - -1.6 535,376 + -2.5 535,376 + +2.2 535,376 + -1.1 535,504 - -1.9 535,524 + -0.0 535,524 + +0.3 535,524 + +0.4 535,524 + -0.4 535,524 + +1.2 535,524 + +0.3 535,524 + -1.8 535,525 - +0.6 535,525 - +0.3 535,525 - -1.0 535,525 - -0.3 535,525 - +0.3 535,525 - +1.1 535,525 - -1.5 535,525 - -1.9 535,525 - +1.2 535,677 + -0.3 535,677 + +0.6 535,677 + -2.3 535,677 + +1.2 535,677 + -0.2 535,677 + -0.3 535,678 - +0.6 535,678 - -1.9 535,727 + +1.0 535,727 + +0.0 535,727 + -1.0 535,727 + +1.0 535,727 + +0.8 535,727 + +0.4 535,728 - -2.9 535,728 - -2.1 535,985 + Xcc-8004.577.1 0.24 +0.2 535,986 - Xcc-8004.577.1 0.25 +1.5 535,986 - Xcc-8004.577.1 0.25 -0.0 535,986 - Xcc-8004.577.1 0.25 -1.0 535,986 - Xcc-8004.577.1 0.25 +0.6 535,986 - Xcc-8004.577.1 0.25 -0.4 535,986 - Xcc-8004.577.1 0.25 +1.9 536,153 + Xcc-8004.577.1 0.54 -1.6 536,153 + Xcc-8004.577.1 0.54 -0.5 536,153 + Xcc-8004.577.1 0.54 +0.6 536,153 + Xcc-8004.577.1 0.54 +1.2 536,154 - Xcc-8004.577.1 0.54 -0.1 536,154 - Xcc-8004.577.1 0.54 +0.7 536,201 + Xcc-8004.577.1 0.62 -0.3 536,201 + Xcc-8004.577.1 0.62 -0.3 536,202 - Xcc-8004.577.1 0.62 +1.1
Or see this region's nucleotide sequence