Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.570.1 and Xcc-8004.571.1 overlap by 8 nucleotides Xcc-8004.571.1 and Xcc-8004.572.1 are separated by 177 nucleotides
Xcc-8004.570.1: Xcc-8004.570.1 - Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4), at 525,365 to 526,435
Xcc-8004.570.1
Xcc-8004.571.1: Xcc-8004.571.1 - Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4), at 526,428 to 527,516
Xcc-8004.571.1
Xcc-8004.572.1: Xcc-8004.572.1 - Nuclease, at 527,694 to 531,275
Xcc-8004.572.1
Position (kb) 526
527
528 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 525.451 kb on + strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.451 kb on + strand at 525.462 kb on + strand at 525.462 kb on + strand at 525.462 kb on + strand at 525.463 kb on - strand at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.498 kb on + strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.499 kb on - strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.807 kb on + strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.808 kb on - strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.816 kb on + strand, within Xcc-8004.570.1 at 525.817 kb on - strand, within Xcc-8004.570.1 at 525.817 kb on - strand, within Xcc-8004.570.1 at 525.817 kb on - strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.837 kb on + strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.838 kb on - strand, within Xcc-8004.570.1 at 525.882 kb on + strand, within Xcc-8004.570.1 at 525.882 kb on + strand, within Xcc-8004.570.1 at 525.882 kb on + strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 525.883 kb on - strand, within Xcc-8004.570.1 at 526.084 kb on - strand, within Xcc-8004.570.1 at 526.084 kb on - strand, within Xcc-8004.570.1 at 526.253 kb on + strand, within Xcc-8004.570.1 at 526.253 kb on + strand, within Xcc-8004.570.1 at 526.253 kb on + strand, within Xcc-8004.570.1 at 526.253 kb on + strand, within Xcc-8004.570.1 at 526.253 kb on + strand, within Xcc-8004.570.1 at 526.253 kb on + strand, within Xcc-8004.570.1 at 526.254 kb on - strand, within Xcc-8004.570.1 at 526.254 kb on - strand, within Xcc-8004.570.1 at 526.254 kb on - strand, within Xcc-8004.570.1 at 526.254 kb on - strand, within Xcc-8004.570.1 at 526.254 kb on - strand, within Xcc-8004.570.1 at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.380 kb on + strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.381 kb on - strand at 526.498 kb on + strand at 526.498 kb on + strand at 526.498 kb on + strand at 526.498 kb on + strand at 526.498 kb on + strand at 526.499 kb on - strand at 526.499 kb on - strand at 526.504 kb on + strand at 526.504 kb on + strand at 526.505 kb on - strand at 526.538 kb on + strand, within Xcc-8004.571.1 at 526.539 kb on - strand, within Xcc-8004.571.1 at 526.546 kb on + strand, within Xcc-8004.571.1 at 526.546 kb on + strand, within Xcc-8004.571.1 at 526.546 kb on + strand, within Xcc-8004.571.1 at 526.546 kb on + strand, within Xcc-8004.571.1 at 526.546 kb on + strand, within Xcc-8004.571.1 at 526.546 kb on + strand, within Xcc-8004.571.1 at 526.547 kb on - strand, within Xcc-8004.571.1 at 526.547 kb on - strand, within Xcc-8004.571.1 at 526.547 kb on - strand, within Xcc-8004.571.1 at 526.637 kb on - strand, within Xcc-8004.571.1 at 526.741 kb on + strand, within Xcc-8004.571.1 at 526.741 kb on + strand, within Xcc-8004.571.1 at 526.741 kb on + strand, within Xcc-8004.571.1 at 526.742 kb on - strand, within Xcc-8004.571.1 at 526.742 kb on - strand, within Xcc-8004.571.1 at 526.845 kb on + strand, within Xcc-8004.571.1 at 526.845 kb on + strand, within Xcc-8004.571.1 at 526.845 kb on + strand, within Xcc-8004.571.1 at 526.845 kb on + strand, within Xcc-8004.571.1 at 526.845 kb on + strand, within Xcc-8004.571.1 at 526.966 kb on + strand, within Xcc-8004.571.1 at 526.966 kb on + strand, within Xcc-8004.571.1 at 526.966 kb on + strand, within Xcc-8004.571.1 at 526.966 kb on + strand, within Xcc-8004.571.1 at 526.966 kb on + strand, within Xcc-8004.571.1 at 526.967 kb on - strand, within Xcc-8004.571.1 at 526.993 kb on + strand, within Xcc-8004.571.1 at 526.993 kb on + strand, within Xcc-8004.571.1 at 526.993 kb on + strand, within Xcc-8004.571.1 at 526.993 kb on + strand, within Xcc-8004.571.1 at 526.994 kb on - strand, within Xcc-8004.571.1 at 526.994 kb on - strand, within Xcc-8004.571.1 at 526.994 kb on - strand, within Xcc-8004.571.1 at 527.113 kb on - strand, within Xcc-8004.571.1 at 527.185 kb on + strand, within Xcc-8004.571.1 at 527.185 kb on + strand, within Xcc-8004.571.1 at 527.185 kb on + strand, within Xcc-8004.571.1 at 527.185 kb on + strand, within Xcc-8004.571.1 at 527.185 kb on + strand, within Xcc-8004.571.1 at 527.186 kb on - strand, within Xcc-8004.571.1 at 527.186 kb on - strand, within Xcc-8004.571.1 at 527.233 kb on + strand, within Xcc-8004.571.1 at 527.233 kb on + strand, within Xcc-8004.571.1 at 527.234 kb on - strand, within Xcc-8004.571.1 at 527.243 kb on - strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.323 kb on + strand, within Xcc-8004.571.1 at 527.324 kb on - strand, within Xcc-8004.571.1 at 527.324 kb on - strand, within Xcc-8004.571.1 at 527.324 kb on - strand, within Xcc-8004.571.1 at 527.324 kb on - strand, within Xcc-8004.571.1 at 527.324 kb on - strand, within Xcc-8004.571.1 at 527.324 kb on - strand, within Xcc-8004.571.1 at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.476 kb on + strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.477 kb on - strand at 527.485 kb on + strand at 527.486 kb on - strand at 527.486 kb on - strand at 527.509 kb on - strand at 527.551 kb on + strand at 527.551 kb on + strand at 527.552 kb on - strand at 527.552 kb on - strand at 527.552 kb on - strand at 527.552 kb on - strand at 527.552 kb on - strand at 527.552 kb on - strand at 527.552 kb on - strand at 527.567 kb on - strand at 527.567 kb on - strand at 527.658 kb on + strand at 527.658 kb on + strand at 527.659 kb on - strand at 527.659 kb on - strand at 528.023 kb on + strand at 528.040 kb on + strand at 528.040 kb on + strand at 528.040 kb on + strand at 528.040 kb on + strand at 528.041 kb on - strand at 528.041 kb on - strand at 528.433 kb on + strand, within Xcc-8004.572.1 at 528.433 kb on + strand, within Xcc-8004.572.1 at 528.433 kb on + strand, within Xcc-8004.572.1 at 528.433 kb on + strand, within Xcc-8004.572.1 at 528.433 kb on + strand, within Xcc-8004.572.1 at 528.434 kb on - strand, within Xcc-8004.572.1 at 528.476 kb on + strand, within Xcc-8004.572.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 525,451 + -2.3 525,451 + -2.9 525,451 + -1.0 525,451 + +0.6 525,451 + -0.7 525,462 + +0.7 525,462 + -1.1 525,462 + +1.9 525,463 - -0.1 525,498 + Xcc-8004.570.1 0.12 -2.6 525,498 + Xcc-8004.570.1 0.12 -0.7 525,498 + Xcc-8004.570.1 0.12 -1.6 525,498 + Xcc-8004.570.1 0.12 -1.8 525,499 - Xcc-8004.570.1 0.13 -1.1 525,499 - Xcc-8004.570.1 0.13 -1.2 525,499 - Xcc-8004.570.1 0.13 -0.2 525,499 - Xcc-8004.570.1 0.13 -0.1 525,499 - Xcc-8004.570.1 0.13 +0.5 525,499 - Xcc-8004.570.1 0.13 +2.6 525,807 + Xcc-8004.570.1 0.41 +0.1 525,807 + Xcc-8004.570.1 0.41 -2.4 525,807 + Xcc-8004.570.1 0.41 -1.4 525,807 + Xcc-8004.570.1 0.41 -0.2 525,807 + Xcc-8004.570.1 0.41 -0.6 525,808 - Xcc-8004.570.1 0.41 -1.3 525,808 - Xcc-8004.570.1 0.41 -0.5 525,808 - Xcc-8004.570.1 0.41 -1.0 525,808 - Xcc-8004.570.1 0.41 -3.3 525,808 - Xcc-8004.570.1 0.41 -3.5 525,808 - Xcc-8004.570.1 0.41 -1.4 525,816 + Xcc-8004.570.1 0.42 -0.5 525,816 + Xcc-8004.570.1 0.42 -0.3 525,816 + Xcc-8004.570.1 0.42 +0.5 525,816 + Xcc-8004.570.1 0.42 -0.8 525,816 + Xcc-8004.570.1 0.42 -3.4 525,816 + Xcc-8004.570.1 0.42 -1.6 525,816 + Xcc-8004.570.1 0.42 +0.2 525,816 + Xcc-8004.570.1 0.42 -0.2 525,816 + Xcc-8004.570.1 0.42 -1.1 525,816 + Xcc-8004.570.1 0.42 -3.1 525,817 - Xcc-8004.570.1 0.42 -2.2 525,817 - Xcc-8004.570.1 0.42 +0.0 525,817 - Xcc-8004.570.1 0.42 -0.0 525,837 + Xcc-8004.570.1 0.44 -2.1 525,837 + Xcc-8004.570.1 0.44 -1.0 525,837 + Xcc-8004.570.1 0.44 -0.6 525,837 + Xcc-8004.570.1 0.44 -2.8 525,837 + Xcc-8004.570.1 0.44 -1.4 525,837 + Xcc-8004.570.1 0.44 +1.1 525,837 + Xcc-8004.570.1 0.44 +0.1 525,837 + Xcc-8004.570.1 0.44 -1.3 525,837 + Xcc-8004.570.1 0.44 +0.8 525,837 + Xcc-8004.570.1 0.44 +1.1 525,838 - Xcc-8004.570.1 0.44 -1.7 525,838 - Xcc-8004.570.1 0.44 -1.5 525,838 - Xcc-8004.570.1 0.44 -1.3 525,838 - Xcc-8004.570.1 0.44 +0.4 525,838 - Xcc-8004.570.1 0.44 +0.2 525,838 - Xcc-8004.570.1 0.44 -0.5 525,838 - Xcc-8004.570.1 0.44 -1.0 525,838 - Xcc-8004.570.1 0.44 +0.0 525,838 - Xcc-8004.570.1 0.44 -0.7 525,838 - Xcc-8004.570.1 0.44 -0.9 525,838 - Xcc-8004.570.1 0.44 +0.3 525,838 - Xcc-8004.570.1 0.44 +0.5 525,838 - Xcc-8004.570.1 0.44 -3.0 525,838 - Xcc-8004.570.1 0.44 -0.4 525,882 + Xcc-8004.570.1 0.48 -1.5 525,882 + Xcc-8004.570.1 0.48 -1.2 525,882 + Xcc-8004.570.1 0.48 +0.1 525,883 - Xcc-8004.570.1 0.48 +1.2 525,883 - Xcc-8004.570.1 0.48 +0.0 525,883 - Xcc-8004.570.1 0.48 -0.2 525,883 - Xcc-8004.570.1 0.48 -2.2 526,084 - Xcc-8004.570.1 0.67 +0.5 526,084 - Xcc-8004.570.1 0.67 -1.2 526,253 + Xcc-8004.570.1 0.83 -1.6 526,253 + Xcc-8004.570.1 0.83 +0.6 526,253 + Xcc-8004.570.1 0.83 -1.1 526,253 + Xcc-8004.570.1 0.83 -1.0 526,253 + Xcc-8004.570.1 0.83 -0.6 526,253 + Xcc-8004.570.1 0.83 -1.4 526,254 - Xcc-8004.570.1 0.83 -2.4 526,254 - Xcc-8004.570.1 0.83 +1.2 526,254 - Xcc-8004.570.1 0.83 -0.5 526,254 - Xcc-8004.570.1 0.83 -1.3 526,254 - Xcc-8004.570.1 0.83 +0.2 526,380 + -0.3 526,380 + +0.0 526,380 + -1.2 526,380 + +0.1 526,380 + +0.6 526,380 + -1.6 526,380 + -2.3 526,380 + -1.4 526,380 + -1.8 526,380 + +1.5 526,380 + -0.2 526,380 + -0.6 526,381 - -0.1 526,381 - -2.9 526,381 - -0.8 526,381 - +0.5 526,381 - -0.1 526,381 - -1.1 526,381 - -0.0 526,381 - -0.4 526,498 + +0.1 526,498 + +0.1 526,498 + -1.6 526,498 + -1.5 526,498 + +1.1 526,499 - -0.4 526,499 - -1.2 526,504 + +0.2 526,504 + -1.9 526,505 - +0.7 526,538 + Xcc-8004.571.1 0.10 -2.7 526,539 - Xcc-8004.571.1 0.10 -1.3 526,546 + Xcc-8004.571.1 0.11 -1.6 526,546 + Xcc-8004.571.1 0.11 -0.4 526,546 + Xcc-8004.571.1 0.11 -1.5 526,546 + Xcc-8004.571.1 0.11 -0.3 526,546 + Xcc-8004.571.1 0.11 -1.1 526,546 + Xcc-8004.571.1 0.11 -1.0 526,547 - Xcc-8004.571.1 0.11 -1.7 526,547 - Xcc-8004.571.1 0.11 -0.5 526,547 - Xcc-8004.571.1 0.11 -1.5 526,637 - Xcc-8004.571.1 0.19 +0.1 526,741 + Xcc-8004.571.1 0.29 +0.2 526,741 + Xcc-8004.571.1 0.29 +0.2 526,741 + Xcc-8004.571.1 0.29 -1.0 526,742 - Xcc-8004.571.1 0.29 +0.1 526,742 - Xcc-8004.571.1 0.29 -1.4 526,845 + Xcc-8004.571.1 0.38 +0.0 526,845 + Xcc-8004.571.1 0.38 -1.2 526,845 + Xcc-8004.571.1 0.38 -3.2 526,845 + Xcc-8004.571.1 0.38 -1.9 526,845 + Xcc-8004.571.1 0.38 -2.1 526,966 + Xcc-8004.571.1 0.49 -0.4 526,966 + Xcc-8004.571.1 0.49 -2.7 526,966 + Xcc-8004.571.1 0.49 +0.1 526,966 + Xcc-8004.571.1 0.49 -0.8 526,966 + Xcc-8004.571.1 0.49 -0.6 526,967 - Xcc-8004.571.1 0.49 -0.4 526,993 + Xcc-8004.571.1 0.52 -1.8 526,993 + Xcc-8004.571.1 0.52 -2.4 526,993 + Xcc-8004.571.1 0.52 -0.9 526,993 + Xcc-8004.571.1 0.52 -0.3 526,994 - Xcc-8004.571.1 0.52 -1.7 526,994 - Xcc-8004.571.1 0.52 +0.2 526,994 - Xcc-8004.571.1 0.52 -0.9 527,113 - Xcc-8004.571.1 0.63 -0.4 527,185 + Xcc-8004.571.1 0.70 +1.0 527,185 + Xcc-8004.571.1 0.70 +0.6 527,185 + Xcc-8004.571.1 0.70 -1.4 527,185 + Xcc-8004.571.1 0.70 +0.1 527,185 + Xcc-8004.571.1 0.70 -0.9 527,186 - Xcc-8004.571.1 0.70 +0.4 527,186 - Xcc-8004.571.1 0.70 +0.0 527,233 + Xcc-8004.571.1 0.74 -3.9 527,233 + Xcc-8004.571.1 0.74 -0.9 527,234 - Xcc-8004.571.1 0.74 -1.6 527,243 - Xcc-8004.571.1 0.75 -1.1 527,323 + Xcc-8004.571.1 0.82 -1.6 527,323 + Xcc-8004.571.1 0.82 +1.0 527,323 + Xcc-8004.571.1 0.82 -0.9 527,323 + Xcc-8004.571.1 0.82 -1.4 527,323 + Xcc-8004.571.1 0.82 -1.7 527,323 + Xcc-8004.571.1 0.82 -2.4 527,323 + Xcc-8004.571.1 0.82 -0.1 527,324 - Xcc-8004.571.1 0.82 -1.7 527,324 - Xcc-8004.571.1 0.82 +0.4 527,324 - Xcc-8004.571.1 0.82 +0.6 527,324 - Xcc-8004.571.1 0.82 -1.2 527,324 - Xcc-8004.571.1 0.82 +0.1 527,324 - Xcc-8004.571.1 0.82 -1.3 527,476 + -0.9 527,476 + +1.0 527,476 + -0.2 527,476 + +0.6 527,476 + -1.5 527,476 + -2.7 527,476 + -1.3 527,476 + -1.1 527,476 + -0.2 527,476 + -0.5 527,476 + -0.2 527,477 - -1.0 527,477 - +0.7 527,477 - +0.7 527,477 - -1.6 527,477 - +0.2 527,477 - -0.9 527,477 - -2.1 527,477 - -2.2 527,477 - +0.6 527,477 - +0.9 527,477 - +0.2 527,477 - -1.8 527,477 - +0.6 527,477 - -1.6 527,477 - +0.4 527,485 + -1.4 527,486 - -2.7 527,486 - -1.3 527,509 - -0.6 527,551 + -0.3 527,551 + +2.3 527,552 - -0.4 527,552 - +1.4 527,552 - +0.2 527,552 - -2.4 527,552 - -1.0 527,552 - +1.8 527,552 - -0.7 527,567 - +0.6 527,567 - +0.1 527,658 + -1.3 527,658 + -0.4 527,659 - -0.1 527,659 - -1.1 528,023 + -0.4 528,040 + -0.3 528,040 + -0.1 528,040 + -2.2 528,040 + -0.9 528,041 - +2.0 528,041 - -0.3 528,433 + Xcc-8004.572.1 0.21 -0.0 528,433 + Xcc-8004.572.1 0.21 -0.5 528,433 + Xcc-8004.572.1 0.21 -0.4 528,433 + Xcc-8004.572.1 0.21 +1.5 528,433 + Xcc-8004.572.1 0.21 -1.1 528,434 - Xcc-8004.572.1 0.21 +0.3 528,476 + Xcc-8004.572.1 0.22 -1.8
Or see this region's nucleotide sequence