Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4792.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4791.1 and Xcc-8004.4792.1 are separated by 93 nucleotidesXcc-8004.4792.1 and Xcc-8004.4793.1 are separated by 127 nucleotides Xcc-8004.4791.1: Xcc-8004.4791.1 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 4,559,787 to 4,561,025 Xcc-8004.4791.1 Xcc-8004.4792.1: Xcc-8004.4792.1 - Acriflavin resistance protein, at 4,561,119 to 4,564,367 Xcc-8004.4792.1 Xcc-8004.4793.1: Xcc-8004.4793.1 - Acriflavin resistance protein, at 4,564,495 to 4,567,635 Xcc-8004.4793.1 Position (kb) 4561 4562 4563 4564 4565Strain fitness (log2 ratio) -2 -1 0 1 2at 4560.129 kb on + strand, within Xcc-8004.4791.1at 4560.130 kb on - strand, within Xcc-8004.4791.1at 4560.130 kb on - strand, within Xcc-8004.4791.1at 4560.130 kb on - strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.192 kb on + strand, within Xcc-8004.4791.1at 4560.193 kb on - strand, within Xcc-8004.4791.1at 4560.193 kb on - strand, within Xcc-8004.4791.1at 4560.216 kb on + strand, within Xcc-8004.4791.1at 4560.216 kb on + strand, within Xcc-8004.4791.1at 4560.217 kb on - strand, within Xcc-8004.4791.1at 4560.217 kb on - strand, within Xcc-8004.4791.1at 4560.217 kb on - strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.225 kb on + strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.226 kb on - strand, within Xcc-8004.4791.1at 4560.273 kb on + strand, within Xcc-8004.4791.1at 4560.274 kb on - strand, within Xcc-8004.4791.1at 4560.274 kb on - strand, within Xcc-8004.4791.1at 4560.447 kb on + strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.448 kb on - strand, within Xcc-8004.4791.1at 4560.753 kb on + strand, within Xcc-8004.4791.1at 4560.753 kb on + strand, within Xcc-8004.4791.1at 4560.753 kb on + strand, within Xcc-8004.4791.1at 4560.754 kb on - strand, within Xcc-8004.4791.1at 4560.754 kb on - strand, within Xcc-8004.4791.1at 4560.759 kb on + strand, within Xcc-8004.4791.1at 4560.759 kb on + strand, within Xcc-8004.4791.1at 4560.759 kb on + strand, within Xcc-8004.4791.1at 4560.760 kb on - strand, within Xcc-8004.4791.1at 4560.760 kb on - strand, within Xcc-8004.4791.1at 4560.760 kb on - strand, within Xcc-8004.4791.1at 4560.802 kb on + strand, within Xcc-8004.4791.1at 4560.802 kb on + strand, within Xcc-8004.4791.1at 4560.803 kb on - strand, within Xcc-8004.4791.1at 4560.803 kb on - strand, within Xcc-8004.4791.1at 4561.024 kb on - strandat 4561.024 kb on - strandat 4561.270 kb on - strandat 4561.311 kb on - strandat 4561.348 kb on + strandat 4561.485 kb on + strand, within Xcc-8004.4792.1at 4561.498 kb on - strand, within Xcc-8004.4792.1at 4561.791 kb on + strand, within Xcc-8004.4792.1at 4561.792 kb on - strand, within Xcc-8004.4792.1at 4561.854 kb on + strand, within Xcc-8004.4792.1at 4561.855 kb on - strand, within Xcc-8004.4792.1at 4561.855 kb on - strand, within Xcc-8004.4792.1at 4562.574 kb on + strand, within Xcc-8004.4792.1at 4562.575 kb on - strand, within Xcc-8004.4792.1at 4562.575 kb on - strand, within Xcc-8004.4792.1at 4562.650 kb on + strand, within Xcc-8004.4792.1at 4562.651 kb on - strand, within Xcc-8004.4792.1at 4562.651 kb on - strand, within Xcc-8004.4792.1at 4562.760 kb on + strand, within Xcc-8004.4792.1at 4562.760 kb on + strand, within Xcc-8004.4792.1at 4562.760 kb on + strand, within Xcc-8004.4792.1at 4562.924 kb on + strand, within Xcc-8004.4792.1at 4563.121 kb on - strand, within Xcc-8004.4792.1at 4563.121 kb on - strand, within Xcc-8004.4792.1at 4563.126 kb on + strand, within Xcc-8004.4792.1at 4563.322 kb on - strand, within Xcc-8004.4792.1at 4563.322 kb on - strand, within Xcc-8004.4792.1at 4563.840 kb on + strand, within Xcc-8004.4792.1at 4563.841 kb on - strand, within Xcc-8004.4792.1at 4563.841 kb on - strand, within Xcc-8004.4792.1at 4563.841 kb on - strand, within Xcc-8004.4792.1at 4563.862 kb on - strand, within Xcc-8004.4792.1at 4563.870 kb on + strand, within Xcc-8004.4792.1at 4563.871 kb on - strand, within Xcc-8004.4792.1at 4564.242 kb on + strandat 4564.242 kb on + strandat 4564.242 kb on + strandat 4564.260 kb on + strandat 4564.260 kb on + strandat 4564.260 kb on + strandat 4564.260 kb on + strandat 4564.261 kb on - strandat 4564.261 kb on - strandat 4564.261 kb on - strandat 4564.266 kb on + strandat 4564.267 kb on - strandat 4564.267 kb on - strandat 4564.267 kb on - strandat 4564.579 kb on + strandat 4564.580 kb on - strandat 4564.580 kb on - strandat 4564.715 kb on + strandat 4564.786 kb on - strandat 4564.876 kb on + strand, within Xcc-8004.4793.1at 4564.876 kb on + strand, within Xcc-8004.4793.1at 4564.877 kb on - strand, within Xcc-8004.4793.1at 4565.282 kb on - strand, within Xcc-8004.4793.1at 4565.303 kb on - strand, within Xcc-8004.4793.1at 4565.303 kb on - strand, within Xcc-8004.4793.1at 4565.344 kb on + strand, within Xcc-8004.4793.1at 4565.344 kb on + strand, within Xcc-8004.4793.1at 4565.345 kb on - strand, within Xcc-8004.4793.1at 4565.345 kb on - strand, within Xcc-8004.4793.1at 4565.345 kb on - strand, within Xcc-8004.4793.1at 4565.345 kb on - strand, within Xcc-8004.4793.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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4,560,129 + Xcc-8004.4791.1 0.28 -0.0
4,560,130 - Xcc-8004.4791.1 0.28 -0.0
4,560,130 - Xcc-8004.4791.1 0.28 -0.2
4,560,130 - Xcc-8004.4791.1 0.28 -2.0
4,560,192 + Xcc-8004.4791.1 0.33 -0.0
4,560,192 + Xcc-8004.4791.1 0.33 -0.1
4,560,192 + Xcc-8004.4791.1 0.33 -1.0
4,560,192 + Xcc-8004.4791.1 0.33 +1.2
4,560,192 + Xcc-8004.4791.1 0.33 +1.9
4,560,193 - Xcc-8004.4791.1 0.33 +0.6
4,560,193 - Xcc-8004.4791.1 0.33 -1.7
4,560,216 + Xcc-8004.4791.1 0.35 +1.7
4,560,216 + Xcc-8004.4791.1 0.35 -1.0
4,560,217 - Xcc-8004.4791.1 0.35 +0.4
4,560,217 - Xcc-8004.4791.1 0.35 -0.3
4,560,217 - Xcc-8004.4791.1 0.35 -1.5
4,560,225 + Xcc-8004.4791.1 0.35 -0.6
4,560,225 + Xcc-8004.4791.1 0.35 +2.0
4,560,225 + Xcc-8004.4791.1 0.35 -0.5
4,560,225 + Xcc-8004.4791.1 0.35 -1.7
4,560,226 - Xcc-8004.4791.1 0.35 -2.2
4,560,226 - Xcc-8004.4791.1 0.35 +0.8
4,560,226 - Xcc-8004.4791.1 0.35 -0.1
4,560,226 - Xcc-8004.4791.1 0.35 -0.3
4,560,226 - Xcc-8004.4791.1 0.35 -1.0
4,560,273 + Xcc-8004.4791.1 0.39 +1.7
4,560,274 - Xcc-8004.4791.1 0.39 -0.2
4,560,274 - Xcc-8004.4791.1 0.39 -0.7
4,560,447 + Xcc-8004.4791.1 0.53 -1.6
4,560,448 - Xcc-8004.4791.1 0.53 +0.1
4,560,448 - Xcc-8004.4791.1 0.53 -0.6
4,560,448 - Xcc-8004.4791.1 0.53 +0.8
4,560,448 - Xcc-8004.4791.1 0.53 +0.8
4,560,448 - Xcc-8004.4791.1 0.53 -1.0
4,560,448 - Xcc-8004.4791.1 0.53 +0.2
4,560,448 - Xcc-8004.4791.1 0.53 -0.6
4,560,448 - Xcc-8004.4791.1 0.53 -0.3
4,560,448 - Xcc-8004.4791.1 0.53 +0.6
4,560,753 + Xcc-8004.4791.1 0.78 +0.2
4,560,753 + Xcc-8004.4791.1 0.78 -0.4
4,560,753 + Xcc-8004.4791.1 0.78 -0.7
4,560,754 - Xcc-8004.4791.1 0.78 -1.4
4,560,754 - Xcc-8004.4791.1 0.78 +0.9
4,560,759 + Xcc-8004.4791.1 0.78 -0.3
4,560,759 + Xcc-8004.4791.1 0.78 +0.0
4,560,759 + Xcc-8004.4791.1 0.78 +1.8
4,560,760 - Xcc-8004.4791.1 0.79 +0.6
4,560,760 - Xcc-8004.4791.1 0.79 +1.6
4,560,760 - Xcc-8004.4791.1 0.79 -0.5
4,560,802 + Xcc-8004.4791.1 0.82 +1.0
4,560,802 + Xcc-8004.4791.1 0.82 -1.2
4,560,803 - Xcc-8004.4791.1 0.82 -0.6
4,560,803 - Xcc-8004.4791.1 0.82 -0.7
4,561,024 - -1.1
4,561,024 - -1.1
4,561,270 - -1.0
4,561,311 - -0.2
4,561,348 + +1.4
4,561,485 + Xcc-8004.4792.1 0.11 +2.3
4,561,498 - Xcc-8004.4792.1 0.12 -0.4
4,561,791 + Xcc-8004.4792.1 0.21 +0.6
4,561,792 - Xcc-8004.4792.1 0.21 -0.5
4,561,854 + Xcc-8004.4792.1 0.23 -1.6
4,561,855 - Xcc-8004.4792.1 0.23 +0.1
4,561,855 - Xcc-8004.4792.1 0.23 -0.2
4,562,574 + Xcc-8004.4792.1 0.45 +0.9
4,562,575 - Xcc-8004.4792.1 0.45 +0.2
4,562,575 - Xcc-8004.4792.1 0.45 +0.2
4,562,650 + Xcc-8004.4792.1 0.47 +0.0
4,562,651 - Xcc-8004.4792.1 0.47 -2.1
4,562,651 - Xcc-8004.4792.1 0.47 +0.2
4,562,760 + Xcc-8004.4792.1 0.51 -0.2
4,562,760 + Xcc-8004.4792.1 0.51 +0.6
4,562,760 + Xcc-8004.4792.1 0.51 -1.0
4,562,924 + Xcc-8004.4792.1 0.56 +0.1
4,563,121 - Xcc-8004.4792.1 0.62 +0.1
4,563,121 - Xcc-8004.4792.1 0.62 +0.8
4,563,126 + Xcc-8004.4792.1 0.62 +1.2
4,563,322 - Xcc-8004.4792.1 0.68 -0.2
4,563,322 - Xcc-8004.4792.1 0.68 -0.1
4,563,840 + Xcc-8004.4792.1 0.84 +2.0
4,563,841 - Xcc-8004.4792.1 0.84 +0.6
4,563,841 - Xcc-8004.4792.1 0.84 +0.5
4,563,841 - Xcc-8004.4792.1 0.84 -0.3
4,563,862 - Xcc-8004.4792.1 0.84 +1.7
4,563,870 + Xcc-8004.4792.1 0.85 -1.7
4,563,871 - Xcc-8004.4792.1 0.85 +1.8
4,564,242 + -1.9
4,564,242 + -0.2
4,564,242 + -1.3
4,564,260 + -1.0
4,564,260 + -0.7
4,564,260 + +1.1
4,564,260 + -0.8
4,564,261 - +0.3
4,564,261 - +0.0
4,564,261 - -1.9
4,564,266 + -0.2
4,564,267 - +0.3
4,564,267 - -0.1
4,564,267 - -0.4
4,564,579 + -1.3
4,564,580 - +0.1
4,564,580 - -1.0
4,564,715 + -0.3
4,564,786 - -1.0
4,564,876 + Xcc-8004.4793.1 0.12 -0.2
4,564,876 + Xcc-8004.4793.1 0.12 +0.3
4,564,877 - Xcc-8004.4793.1 0.12 -0.0
4,565,282 - Xcc-8004.4793.1 0.25 +0.0
4,565,303 - Xcc-8004.4793.1 0.26 +0.5
4,565,303 - Xcc-8004.4793.1 0.26 -1.6
4,565,344 + Xcc-8004.4793.1 0.27 -2.0
4,565,344 + Xcc-8004.4793.1 0.27 -0.9
4,565,345 - Xcc-8004.4793.1 0.27 -1.5
4,565,345 - Xcc-8004.4793.1 0.27 +0.3
4,565,345 - Xcc-8004.4793.1 0.27 +0.0
4,565,345 - Xcc-8004.4793.1 0.27 -0.9

Or see this region's nucleotide sequence