Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4337.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4335.1 and Xcc-8004.4336.1 are separated by 68 nucleotidesXcc-8004.4336.1 and Xcc-8004.4337.1 are separated by 32 nucleotidesXcc-8004.4337.1 and Xcc-8004.4338.1 are separated by 240 nucleotidesXcc-8004.4338.1 and Xcc-8004.4339.1 overlap by 14 nucleotidesXcc-8004.4339.1 and Xcc-8004.4340.1 overlap by 4 nucleotides Xcc-8004.4335.1: Xcc-8004.4335.1 - FIG01210530: hypothetical protein, at 4,152,457 to 4,153,755 Xcc-8004.4335.1 Xcc-8004.4336.1: Xcc-8004.4336.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 4,153,824 to 4,154,681 Xcc-8004.4336.1 Xcc-8004.4337.1: Xcc-8004.4337.1 - FIG01210643: hypothetical protein, at 4,154,714 to 4,155,433 Xcc-8004.4337.1 Xcc-8004.4338.1: Xcc-8004.4338.1 - hypothetical protein, at 4,155,674 to 4,155,784 Xcc-8004.4338.1 Xcc-8004.4339.1: Xcc-8004.4339.1 - FIG01211792: hypothetical protein, at 4,155,771 to 4,156,208 Xcc-8004.4339.1 Xcc-8004.4340.1: Xcc-8004.4340.1 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein, at 4,156,205 to 4,157,113 Xcc-8004.4340.1 Position (kb) 4154 4155 4156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4153.721 kb on - strandat 4153.743 kb on - strandat 4153.753 kb on + strandat 4153.754 kb on - strandat 4153.796 kb on + strandat 4153.796 kb on + strandat 4153.796 kb on + strandat 4153.797 kb on - strandat 4153.797 kb on - strandat 4153.821 kb on - strandat 4153.823 kb on + strandat 4153.878 kb on + strandat 4153.879 kb on - strandat 4153.941 kb on + strand, within Xcc-8004.4336.1at 4153.942 kb on - strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.953 kb on + strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.954 kb on - strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.995 kb on + strand, within Xcc-8004.4336.1at 4153.996 kb on - strand, within Xcc-8004.4336.1at 4153.996 kb on - strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.056 kb on + strand, within Xcc-8004.4336.1at 4154.057 kb on - strand, within Xcc-8004.4336.1at 4154.057 kb on - strand, within Xcc-8004.4336.1at 4154.107 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.188 kb on - strand, within Xcc-8004.4336.1at 4154.304 kb on + strand, within Xcc-8004.4336.1at 4154.305 kb on - strand, within Xcc-8004.4336.1at 4154.305 kb on - strand, within Xcc-8004.4336.1at 4154.352 kb on + strand, within Xcc-8004.4336.1at 4154.352 kb on + strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.353 kb on - strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.358 kb on + strand, within Xcc-8004.4336.1at 4154.359 kb on - strand, within Xcc-8004.4336.1at 4154.359 kb on - strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.373 kb on + strand, within Xcc-8004.4336.1at 4154.374 kb on - strand, within Xcc-8004.4336.1at 4154.374 kb on - strand, within Xcc-8004.4336.1at 4154.526 kb on + strand, within Xcc-8004.4336.1at 4154.527 kb on - strand, within Xcc-8004.4336.1at 4154.625 kb on + strandat 4154.626 kb on - strandat 4154.626 kb on - strandat 4154.626 kb on - strandat 4154.811 kb on + strand, within Xcc-8004.4337.1at 4154.812 kb on - strand, within Xcc-8004.4337.1at 4154.819 kb on + strand, within Xcc-8004.4337.1at 4154.820 kb on - strand, within Xcc-8004.4337.1at 4154.964 kb on + strand, within Xcc-8004.4337.1at 4154.965 kb on - strand, within Xcc-8004.4337.1at 4155.020 kb on + strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.021 kb on - strand, within Xcc-8004.4337.1at 4155.113 kb on + strand, within Xcc-8004.4337.1at 4155.113 kb on + strand, within Xcc-8004.4337.1at 4155.114 kb on - strand, within Xcc-8004.4337.1at 4155.114 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.210 kb on - strand, within Xcc-8004.4337.1at 4155.407 kb on + strandat 4155.407 kb on + strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.408 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.432 kb on - strandat 4155.511 kb on + strandat 4155.675 kb on + strandat 4155.728 kb on + strand, within Xcc-8004.4338.1at 4155.728 kb on + strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.729 kb on - strand, within Xcc-8004.4338.1at 4155.768 kb on + strand, within Xcc-8004.4338.1at 4155.769 kb on - strand, within Xcc-8004.4338.1at 4155.769 kb on - strand, within Xcc-8004.4338.1at 4155.769 kb on - strand, within Xcc-8004.4338.1at 4156.007 kb on - strand, within Xcc-8004.4339.1at 4156.007 kb on - strand, within Xcc-8004.4339.1at 4156.019 kb on - strand, within Xcc-8004.4339.1at 4156.019 kb on - strand, within Xcc-8004.4339.1at 4156.080 kb on - strand, within Xcc-8004.4339.1at 4156.300 kb on - strand, within Xcc-8004.4340.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
remove
4,153,721 - +0.8
4,153,743 - +0.4
4,153,753 + +0.1
4,153,754 - +0.0
4,153,796 + -0.2
4,153,796 + -0.5
4,153,796 + +0.7
4,153,797 - -2.8
4,153,797 - -0.1
4,153,821 - -1.1
4,153,823 + -1.3
4,153,878 + -1.1
4,153,879 - -0.2
4,153,941 + Xcc-8004.4336.1 0.14 -1.6
4,153,942 - Xcc-8004.4336.1 0.14 -0.0
4,153,953 + Xcc-8004.4336.1 0.15 -0.1
4,153,953 + Xcc-8004.4336.1 0.15 +0.1
4,153,953 + Xcc-8004.4336.1 0.15 +0.7
4,153,953 + Xcc-8004.4336.1 0.15 -0.2
4,153,954 - Xcc-8004.4336.1 0.15 +1.2
4,153,954 - Xcc-8004.4336.1 0.15 +0.5
4,153,954 - Xcc-8004.4336.1 0.15 -0.2
4,153,995 + Xcc-8004.4336.1 0.20 -1.1
4,153,995 + Xcc-8004.4336.1 0.20 +0.2
4,153,995 + Xcc-8004.4336.1 0.20 +0.1
4,153,995 + Xcc-8004.4336.1 0.20 -0.4
4,153,996 - Xcc-8004.4336.1 0.20 -0.0
4,153,996 - Xcc-8004.4336.1 0.20 +1.2
4,154,056 + Xcc-8004.4336.1 0.27 -1.6
4,154,056 + Xcc-8004.4336.1 0.27 +0.5
4,154,056 + Xcc-8004.4336.1 0.27 -0.6
4,154,057 - Xcc-8004.4336.1 0.27 +0.8
4,154,057 - Xcc-8004.4336.1 0.27 -1.9
4,154,107 - Xcc-8004.4336.1 0.33 +1.1
4,154,188 - Xcc-8004.4336.1 0.42 +0.1
4,154,188 - Xcc-8004.4336.1 0.42 +0.7
4,154,188 - Xcc-8004.4336.1 0.42 +2.2
4,154,304 + Xcc-8004.4336.1 0.56 -0.5
4,154,305 - Xcc-8004.4336.1 0.56 +0.4
4,154,305 - Xcc-8004.4336.1 0.56 +0.0
4,154,352 + Xcc-8004.4336.1 0.62 -2.2
4,154,352 + Xcc-8004.4336.1 0.62 +0.6
4,154,353 - Xcc-8004.4336.1 0.62 +0.5
4,154,353 - Xcc-8004.4336.1 0.62 +0.4
4,154,353 - Xcc-8004.4336.1 0.62 +1.1
4,154,358 + Xcc-8004.4336.1 0.62 +0.4
4,154,358 + Xcc-8004.4336.1 0.62 +0.3
4,154,358 + Xcc-8004.4336.1 0.62 +0.7
4,154,359 - Xcc-8004.4336.1 0.62 +0.4
4,154,359 - Xcc-8004.4336.1 0.62 +0.2
4,154,373 + Xcc-8004.4336.1 0.64 +0.4
4,154,373 + Xcc-8004.4336.1 0.64 +0.1
4,154,373 + Xcc-8004.4336.1 0.64 -0.5
4,154,374 - Xcc-8004.4336.1 0.64 -0.9
4,154,374 - Xcc-8004.4336.1 0.64 -2.1
4,154,526 + Xcc-8004.4336.1 0.82 -1.7
4,154,527 - Xcc-8004.4336.1 0.82 -0.5
4,154,625 + -2.4
4,154,626 - -0.9
4,154,626 - +0.6
4,154,626 - -0.1
4,154,811 + Xcc-8004.4337.1 0.13 -0.2
4,154,812 - Xcc-8004.4337.1 0.14 -1.9
4,154,819 + Xcc-8004.4337.1 0.15 +0.0
4,154,820 - Xcc-8004.4337.1 0.15 -0.8
4,154,964 + Xcc-8004.4337.1 0.35 +1.0
4,154,965 - Xcc-8004.4337.1 0.35 -1.2
4,155,020 + Xcc-8004.4337.1 0.42 -1.1
4,155,021 - Xcc-8004.4337.1 0.43 +0.1
4,155,021 - Xcc-8004.4337.1 0.43 -0.8
4,155,021 - Xcc-8004.4337.1 0.43 -0.4
4,155,021 - Xcc-8004.4337.1 0.43 -0.5
4,155,021 - Xcc-8004.4337.1 0.43 -1.2
4,155,113 + Xcc-8004.4337.1 0.55 -1.2
4,155,113 + Xcc-8004.4337.1 0.55 +0.2
4,155,114 - Xcc-8004.4337.1 0.56 +0.3
4,155,114 - Xcc-8004.4337.1 0.56 -0.6
4,155,210 - Xcc-8004.4337.1 0.69 -0.7
4,155,210 - Xcc-8004.4337.1 0.69 -1.0
4,155,210 - Xcc-8004.4337.1 0.69 -1.9
4,155,407 + -3.1
4,155,407 + +0.6
4,155,408 - -1.2
4,155,408 - -1.3
4,155,408 - -1.4
4,155,432 - -0.4
4,155,432 - -1.4
4,155,432 - -0.4
4,155,432 - -0.9
4,155,511 + +0.1
4,155,675 + -0.7
4,155,728 + Xcc-8004.4338.1 0.49 +0.8
4,155,728 + Xcc-8004.4338.1 0.49 -0.2
4,155,729 - Xcc-8004.4338.1 0.50 +0.5
4,155,729 - Xcc-8004.4338.1 0.50 +4.2
4,155,729 - Xcc-8004.4338.1 0.50 +0.1
4,155,729 - Xcc-8004.4338.1 0.50 +1.6
4,155,729 - Xcc-8004.4338.1 0.50 +0.9
4,155,729 - Xcc-8004.4338.1 0.50 -0.5
4,155,729 - Xcc-8004.4338.1 0.50 +0.2
4,155,729 - Xcc-8004.4338.1 0.50 -2.9
4,155,768 + Xcc-8004.4338.1 0.85 +0.9
4,155,769 - Xcc-8004.4338.1 0.86 +0.1
4,155,769 - Xcc-8004.4338.1 0.86 +0.9
4,155,769 - Xcc-8004.4338.1 0.86 -0.8
4,156,007 - Xcc-8004.4339.1 0.54 +1.6
4,156,007 - Xcc-8004.4339.1 0.54 +0.2
4,156,019 - Xcc-8004.4339.1 0.57 -2.0
4,156,019 - Xcc-8004.4339.1 0.57 -0.6
4,156,080 - Xcc-8004.4339.1 0.71 -0.2
4,156,300 - Xcc-8004.4340.1 0.10 -1.2

Or see this region's nucleotide sequence