Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4294.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4292.1 and Xcc-8004.4293.1 overlap by 4 nucleotidesXcc-8004.4293.1 and Xcc-8004.4294.1 are separated by 88 nucleotidesXcc-8004.4294.1 and Xcc-8004.4295.1 are separated by 515 nucleotides Xcc-8004.4292.1: Xcc-8004.4292.1 - Taurine transport ATP-binding protein TauB, at 4,107,951 to 4,108,793 Xcc-8004.4292.1 Xcc-8004.4293.1: Xcc-8004.4293.1 - Taurine transport system permease protein TauC, at 4,108,790 to 4,109,671 Xcc-8004.4293.1 Xcc-8004.4294.1: Xcc-8004.4294.1 - membrane protein, putative, at 4,109,760 to 4,110,113 Xcc-8004.4294.1 Xcc-8004.4295.1: Xcc-8004.4295.1 - FIG01211353: hypothetical protein, at 4,110,629 to 4,111,552 Xcc-8004.4295.1 Position (kb) 4109 4110 4111Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4108.842 kb on - strandat 4108.961 kb on + strand, within Xcc-8004.4293.1at 4108.961 kb on + strand, within Xcc-8004.4293.1at 4108.961 kb on + strand, within Xcc-8004.4293.1at 4109.031 kb on - strand, within Xcc-8004.4293.1at 4109.099 kb on + strand, within Xcc-8004.4293.1at 4109.099 kb on + strand, within Xcc-8004.4293.1at 4109.099 kb on + strand, within Xcc-8004.4293.1at 4109.100 kb on - strand, within Xcc-8004.4293.1at 4109.100 kb on - strand, within Xcc-8004.4293.1at 4109.312 kb on + strand, within Xcc-8004.4293.1at 4109.312 kb on + strand, within Xcc-8004.4293.1at 4109.312 kb on + strand, within Xcc-8004.4293.1at 4109.312 kb on + strand, within Xcc-8004.4293.1at 4109.312 kb on + strand, within Xcc-8004.4293.1at 4109.313 kb on - strand, within Xcc-8004.4293.1at 4109.313 kb on - strand, within Xcc-8004.4293.1at 4109.363 kb on + strand, within Xcc-8004.4293.1at 4109.364 kb on - strand, within Xcc-8004.4293.1at 4109.364 kb on - strand, within Xcc-8004.4293.1at 4109.384 kb on + strand, within Xcc-8004.4293.1at 4109.384 kb on + strand, within Xcc-8004.4293.1at 4109.385 kb on - strand, within Xcc-8004.4293.1at 4109.385 kb on - strand, within Xcc-8004.4293.1at 4109.385 kb on - strand, within Xcc-8004.4293.1at 4109.385 kb on - strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.525 kb on + strand, within Xcc-8004.4293.1at 4109.526 kb on - strand, within Xcc-8004.4293.1at 4109.526 kb on - strand, within Xcc-8004.4293.1at 4109.552 kb on + strand, within Xcc-8004.4293.1at 4109.553 kb on - strand, within Xcc-8004.4293.1at 4109.566 kb on - strand, within Xcc-8004.4293.1at 4109.647 kb on - strandat 4109.680 kb on - strandat 4109.724 kb on + strandat 4109.724 kb on + strandat 4109.724 kb on + strandat 4109.724 kb on + strandat 4109.725 kb on - strandat 4109.765 kb on + strandat 4109.784 kb on + strandat 4109.785 kb on - strandat 4109.791 kb on - strandat 4109.856 kb on + strand, within Xcc-8004.4294.1at 4109.857 kb on - strand, within Xcc-8004.4294.1at 4109.916 kb on + strand, within Xcc-8004.4294.1at 4109.959 kb on - strand, within Xcc-8004.4294.1at 4110.030 kb on + strand, within Xcc-8004.4294.1at 4110.031 kb on - strand, within Xcc-8004.4294.1at 4110.129 kb on - strandat 4110.129 kb on - strandat 4110.129 kb on - strandat 4110.129 kb on - strandat 4110.170 kb on + strandat 4110.198 kb on + strandat 4110.206 kb on + strandat 4110.259 kb on - strandat 4110.313 kb on - strandat 4110.421 kb on - strandat 4110.594 kb on + strandat 4110.594 kb on + strandat 4110.594 kb on + strandat 4110.630 kb on + strandat 4110.630 kb on + strandat 4110.823 kb on - strand, within Xcc-8004.4295.1at 4110.823 kb on - strand, within Xcc-8004.4295.1at 4110.844 kb on - strand, within Xcc-8004.4295.1at 4110.844 kb on - strand, within Xcc-8004.4295.1at 4110.844 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4110.850 kb on - strand, within Xcc-8004.4295.1at 4111.021 kb on - strand, within Xcc-8004.4295.1at 4111.021 kb on - strand, within Xcc-8004.4295.1at 4111.021 kb on - strand, within Xcc-8004.4295.1at 4111.102 kb on - strand, within Xcc-8004.4295.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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4,108,842 - +0.6
4,108,961 + Xcc-8004.4293.1 0.19 -0.1
4,108,961 + Xcc-8004.4293.1 0.19 +0.7
4,108,961 + Xcc-8004.4293.1 0.19 +0.4
4,109,031 - Xcc-8004.4293.1 0.27 -0.1
4,109,099 + Xcc-8004.4293.1 0.35 -1.7
4,109,099 + Xcc-8004.4293.1 0.35 -1.5
4,109,099 + Xcc-8004.4293.1 0.35 +1.4
4,109,100 - Xcc-8004.4293.1 0.35 -1.7
4,109,100 - Xcc-8004.4293.1 0.35 +1.8
4,109,312 + Xcc-8004.4293.1 0.59 +1.3
4,109,312 + Xcc-8004.4293.1 0.59 +0.4
4,109,312 + Xcc-8004.4293.1 0.59 +0.4
4,109,312 + Xcc-8004.4293.1 0.59 +0.5
4,109,312 + Xcc-8004.4293.1 0.59 -0.7
4,109,313 - Xcc-8004.4293.1 0.59 +1.5
4,109,313 - Xcc-8004.4293.1 0.59 +0.4
4,109,363 + Xcc-8004.4293.1 0.65 +1.4
4,109,364 - Xcc-8004.4293.1 0.65 -2.9
4,109,364 - Xcc-8004.4293.1 0.65 +1.6
4,109,384 + Xcc-8004.4293.1 0.67 -0.0
4,109,384 + Xcc-8004.4293.1 0.67 +1.2
4,109,385 - Xcc-8004.4293.1 0.67 -2.1
4,109,385 - Xcc-8004.4293.1 0.67 +0.9
4,109,385 - Xcc-8004.4293.1 0.67 -2.4
4,109,385 - Xcc-8004.4293.1 0.67 -0.7
4,109,525 + Xcc-8004.4293.1 0.83 -3.2
4,109,525 + Xcc-8004.4293.1 0.83 -0.9
4,109,525 + Xcc-8004.4293.1 0.83 +1.4
4,109,525 + Xcc-8004.4293.1 0.83 +0.2
4,109,525 + Xcc-8004.4293.1 0.83 +0.9
4,109,525 + Xcc-8004.4293.1 0.83 +0.6
4,109,525 + Xcc-8004.4293.1 0.83 +1.2
4,109,526 - Xcc-8004.4293.1 0.83 -1.2
4,109,526 - Xcc-8004.4293.1 0.83 +0.3
4,109,552 + Xcc-8004.4293.1 0.86 -0.5
4,109,553 - Xcc-8004.4293.1 0.87 -0.8
4,109,566 - Xcc-8004.4293.1 0.88 +0.6
4,109,647 - -1.0
4,109,680 - -3.7
4,109,724 + +0.0
4,109,724 + +0.3
4,109,724 + -2.3
4,109,724 + +1.4
4,109,725 - +0.2
4,109,765 + +1.0
4,109,784 + +1.2
4,109,785 - -0.7
4,109,791 - -1.9
4,109,856 + Xcc-8004.4294.1 0.27 -0.1
4,109,857 - Xcc-8004.4294.1 0.27 -0.9
4,109,916 + Xcc-8004.4294.1 0.44 -1.0
4,109,959 - Xcc-8004.4294.1 0.56 -1.2
4,110,030 + Xcc-8004.4294.1 0.76 -2.5
4,110,031 - Xcc-8004.4294.1 0.77 +0.1
4,110,129 - +0.4
4,110,129 - -1.3
4,110,129 - +1.9
4,110,129 - -0.2
4,110,170 + -2.6
4,110,198 + -0.4
4,110,206 + -0.4
4,110,259 - +0.1
4,110,313 - -0.9
4,110,421 - -0.4
4,110,594 + +0.1
4,110,594 + +0.5
4,110,594 + +1.2
4,110,630 + +1.1
4,110,630 + -0.8
4,110,823 - Xcc-8004.4295.1 0.21 +0.1
4,110,823 - Xcc-8004.4295.1 0.21 -0.9
4,110,844 - Xcc-8004.4295.1 0.23 -0.0
4,110,844 - Xcc-8004.4295.1 0.23 -1.0
4,110,844 - Xcc-8004.4295.1 0.23 +1.1
4,110,850 - Xcc-8004.4295.1 0.24 +0.2
4,110,850 - Xcc-8004.4295.1 0.24 -0.7
4,110,850 - Xcc-8004.4295.1 0.24 +0.4
4,110,850 - Xcc-8004.4295.1 0.24 +2.0
4,111,021 - Xcc-8004.4295.1 0.42 -0.5
4,111,021 - Xcc-8004.4295.1 0.42 +0.2
4,111,021 - Xcc-8004.4295.1 0.42 +0.6
4,111,102 - Xcc-8004.4295.1 0.51 -0.2

Or see this region's nucleotide sequence