Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3960.1 and Xcc-8004.3963.1 are separated by 596 nucleotides Xcc-8004.3963.1 and Xcc-8004.3964.1 are separated by 104 nucleotides
Xcc-8004.3960.1: Xcc-8004.3960.1 - Bacterioferritin, at 3,835,025 to 3,835,585
Xcc-8004.3960.1
Xcc-8004.3963.1: Xcc-8004.3963.1 - Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C, at 3,836,182 to 3,838,605
Xcc-8004.3963.1
Xcc-8004.3964.1: Xcc-8004.3964.1 - putative; ORF located using Glimmer/Genemark, at 3,838,710 to 3,839,549
Xcc-8004.3964.1
Position (kb) 3836
3837
3838
3839 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3835.187 kb on + strand, within Xcc-8004.3960.1 at 3835.187 kb on + strand, within Xcc-8004.3960.1 at 3835.187 kb on + strand, within Xcc-8004.3960.1 at 3835.188 kb on - strand, within Xcc-8004.3960.1 at 3835.188 kb on - strand, within Xcc-8004.3960.1 at 3835.206 kb on - strand, within Xcc-8004.3960.1 at 3835.217 kb on + strand, within Xcc-8004.3960.1 at 3835.384 kb on + strand, within Xcc-8004.3960.1 at 3835.384 kb on + strand, within Xcc-8004.3960.1 at 3835.384 kb on + strand, within Xcc-8004.3960.1 at 3835.384 kb on + strand, within Xcc-8004.3960.1 at 3835.385 kb on - strand, within Xcc-8004.3960.1 at 3835.385 kb on - strand, within Xcc-8004.3960.1 at 3835.385 kb on - strand, within Xcc-8004.3960.1 at 3835.385 kb on - strand, within Xcc-8004.3960.1 at 3835.905 kb on + strand at 3835.906 kb on - strand at 3835.914 kb on - strand at 3835.935 kb on - strand at 3835.998 kb on + strand at 3835.998 kb on + strand at 3835.999 kb on - strand at 3836.091 kb on + strand at 3836.100 kb on - strand at 3836.158 kb on + strand at 3836.369 kb on - strand at 3836.627 kb on + strand, within Xcc-8004.3963.1 at 3836.627 kb on + strand, within Xcc-8004.3963.1 at 3836.628 kb on - strand, within Xcc-8004.3963.1 at 3836.698 kb on + strand, within Xcc-8004.3963.1 at 3836.698 kb on + strand, within Xcc-8004.3963.1 at 3836.698 kb on + strand, within Xcc-8004.3963.1 at 3836.882 kb on + strand, within Xcc-8004.3963.1 at 3836.937 kb on - strand, within Xcc-8004.3963.1 at 3836.978 kb on + strand, within Xcc-8004.3963.1 at 3836.979 kb on - strand, within Xcc-8004.3963.1 at 3837.137 kb on + strand, within Xcc-8004.3963.1 at 3837.137 kb on + strand, within Xcc-8004.3963.1 at 3837.413 kb on + strand, within Xcc-8004.3963.1 at 3837.488 kb on + strand, within Xcc-8004.3963.1 at 3837.588 kb on - strand, within Xcc-8004.3963.1 at 3838.059 kb on - strand, within Xcc-8004.3963.1 at 3838.059 kb on - strand, within Xcc-8004.3963.1 at 3838.290 kb on - strand, within Xcc-8004.3963.1 at 3838.712 kb on - strand at 3838.719 kb on - strand at 3838.719 kb on - strand at 3838.749 kb on + strand at 3838.783 kb on - strand at 3838.966 kb on - strand, within Xcc-8004.3964.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 3,835,187 + Xcc-8004.3960.1 0.29 +1.1 3,835,187 + Xcc-8004.3960.1 0.29 +0.7 3,835,187 + Xcc-8004.3960.1 0.29 -1.4 3,835,188 - Xcc-8004.3960.1 0.29 -1.3 3,835,188 - Xcc-8004.3960.1 0.29 +1.2 3,835,206 - Xcc-8004.3960.1 0.32 -0.9 3,835,217 + Xcc-8004.3960.1 0.34 -2.5 3,835,384 + Xcc-8004.3960.1 0.64 -0.9 3,835,384 + Xcc-8004.3960.1 0.64 +1.8 3,835,384 + Xcc-8004.3960.1 0.64 -1.6 3,835,384 + Xcc-8004.3960.1 0.64 -0.8 3,835,385 - Xcc-8004.3960.1 0.64 +0.4 3,835,385 - Xcc-8004.3960.1 0.64 -2.2 3,835,385 - Xcc-8004.3960.1 0.64 +0.4 3,835,385 - Xcc-8004.3960.1 0.64 -0.4 3,835,905 + +1.9 3,835,906 - -0.7 3,835,914 - -0.4 3,835,935 - +1.3 3,835,998 + +0.8 3,835,998 + -0.9 3,835,999 - +1.4 3,836,091 + +0.5 3,836,100 - -1.4 3,836,158 + +0.5 3,836,369 - +2.0 3,836,627 + Xcc-8004.3963.1 0.18 -2.2 3,836,627 + Xcc-8004.3963.1 0.18 +1.1 3,836,628 - Xcc-8004.3963.1 0.18 +0.5 3,836,698 + Xcc-8004.3963.1 0.21 -1.4 3,836,698 + Xcc-8004.3963.1 0.21 -0.6 3,836,698 + Xcc-8004.3963.1 0.21 -2.7 3,836,882 + Xcc-8004.3963.1 0.29 +0.2 3,836,937 - Xcc-8004.3963.1 0.31 -0.6 3,836,978 + Xcc-8004.3963.1 0.33 +0.9 3,836,979 - Xcc-8004.3963.1 0.33 -1.3 3,837,137 + Xcc-8004.3963.1 0.39 +0.7 3,837,137 + Xcc-8004.3963.1 0.39 -1.1 3,837,413 + Xcc-8004.3963.1 0.51 -0.4 3,837,488 + Xcc-8004.3963.1 0.54 -1.6 3,837,588 - Xcc-8004.3963.1 0.58 -0.5 3,838,059 - Xcc-8004.3963.1 0.77 -1.9 3,838,059 - Xcc-8004.3963.1 0.77 +1.3 3,838,290 - Xcc-8004.3963.1 0.87 +0.7 3,838,712 - +1.0 3,838,719 - +0.1 3,838,719 - -0.4 3,838,749 + -1.2 3,838,783 - -0.1 3,838,966 - Xcc-8004.3964.1 0.30 -1.0
Or see this region's nucleotide sequence