Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.383.1 and Xcc-8004.384.1 are separated by 157 nucleotides Xcc-8004.384.1 and Xcc-8004.385.1 are separated by 15 nucleotides Xcc-8004.385.1 and Xcc-8004.386.1 are separated by 621 nucleotides
Xcc-8004.383.1: Xcc-8004.383.1 - hypothetical protein, at 367,325 to 367,510
Xcc-8004.383.1
Xcc-8004.384.1: Xcc-8004.384.1 - Deoxyribonuclease TatD, at 367,668 to 368,474
Xcc-8004.384.1
Xcc-8004.385.1: Xcc-8004.385.1 - FIG01212287: hypothetical protein, at 368,490 to 369,158
Xcc-8004.385.1
Xcc-8004.386.1: Xcc-8004.386.1 - LysR family transcriptional regulator STM3121, at 369,780 to 370,703
Xcc-8004.386.1
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.574 kb on + strand at 367.617 kb on + strand at 367.617 kb on + strand at 367.617 kb on + strand at 367.617 kb on + strand at 367.617 kb on + strand at 367.618 kb on - strand at 367.618 kb on - strand at 367.633 kb on + strand at 367.633 kb on + strand at 367.634 kb on - strand at 367.634 kb on - strand at 367.842 kb on + strand, within Xcc-8004.384.1 at 367.962 kb on + strand, within Xcc-8004.384.1 at 367.962 kb on + strand, within Xcc-8004.384.1 at 367.962 kb on + strand, within Xcc-8004.384.1 at 367.963 kb on - strand, within Xcc-8004.384.1 at 367.963 kb on - strand, within Xcc-8004.384.1 at 367.963 kb on - strand, within Xcc-8004.384.1 at 367.963 kb on - strand, within Xcc-8004.384.1 at 368.181 kb on + strand, within Xcc-8004.384.1 at 368.182 kb on - strand, within Xcc-8004.384.1 at 368.184 kb on + strand, within Xcc-8004.384.1 at 368.184 kb on + strand, within Xcc-8004.384.1 at 368.184 kb on + strand, within Xcc-8004.384.1 at 368.184 kb on + strand, within Xcc-8004.384.1 at 368.184 kb on + strand, within Xcc-8004.384.1 at 368.185 kb on - strand, within Xcc-8004.384.1 at 368.185 kb on - strand, within Xcc-8004.384.1 at 368.185 kb on - strand, within Xcc-8004.384.1 at 368.185 kb on - strand, within Xcc-8004.384.1 at 368.246 kb on - strand, within Xcc-8004.384.1 at 368.491 kb on + strand at 368.866 kb on + strand, within Xcc-8004.385.1 at 368.866 kb on + strand, within Xcc-8004.385.1 at 368.867 kb on - strand, within Xcc-8004.385.1 at 369.100 kb on + strand at 369.100 kb on + strand at 369.199 kb on + strand at 369.200 kb on - strand at 369.335 kb on + strand at 369.335 kb on + strand at 369.384 kb on - strand at 369.384 kb on - strand at 369.400 kb on - strand at 369.400 kb on - strand at 369.461 kb on + strand at 369.462 kb on - strand at 369.491 kb on + strand at 369.519 kb on + strand at 369.519 kb on + strand at 369.535 kb on + strand at 369.535 kb on + strand at 369.536 kb on - strand at 369.597 kb on + strand at 369.597 kb on + strand at 369.598 kb on - strand at 369.628 kb on + strand at 369.656 kb on + strand at 369.657 kb on - strand at 369.657 kb on - strand at 369.657 kb on - strand at 369.657 kb on - strand at 369.672 kb on + strand at 369.673 kb on - strand at 369.673 kb on - strand at 369.775 kb on + strand at 369.895 kb on + strand, within Xcc-8004.386.1 at 370.054 kb on + strand, within Xcc-8004.386.1 at 370.055 kb on - strand, within Xcc-8004.386.1 at 370.055 kb on - strand, within Xcc-8004.386.1 at 370.156 kb on - strand, within Xcc-8004.386.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 367,574 + -1.2 367,617 + -1.5 367,617 + -1.5 367,617 + +0.1 367,617 + +0.2 367,617 + +0.6 367,618 - -0.1 367,618 - +1.0 367,633 + +0.7 367,633 + -1.9 367,634 - -1.4 367,634 - -0.3 367,842 + Xcc-8004.384.1 0.22 -0.8 367,962 + Xcc-8004.384.1 0.36 -0.2 367,962 + Xcc-8004.384.1 0.36 +1.2 367,962 + Xcc-8004.384.1 0.36 +0.6 367,963 - Xcc-8004.384.1 0.37 +0.1 367,963 - Xcc-8004.384.1 0.37 -0.1 367,963 - Xcc-8004.384.1 0.37 -1.1 367,963 - Xcc-8004.384.1 0.37 +1.2 368,181 + Xcc-8004.384.1 0.64 -0.8 368,182 - Xcc-8004.384.1 0.64 +1.6 368,184 + Xcc-8004.384.1 0.64 +0.5 368,184 + Xcc-8004.384.1 0.64 +1.2 368,184 + Xcc-8004.384.1 0.64 +0.0 368,184 + Xcc-8004.384.1 0.64 -1.6 368,184 + Xcc-8004.384.1 0.64 -0.4 368,185 - Xcc-8004.384.1 0.64 +0.5 368,185 - Xcc-8004.384.1 0.64 +0.6 368,185 - Xcc-8004.384.1 0.64 -0.8 368,185 - Xcc-8004.384.1 0.64 -2.0 368,246 - Xcc-8004.384.1 0.72 +0.3 368,491 + -0.1 368,866 + Xcc-8004.385.1 0.56 -0.3 368,866 + Xcc-8004.385.1 0.56 -1.1 368,867 - Xcc-8004.385.1 0.56 -1.6 369,100 + +0.6 369,100 + -2.3 369,199 + +0.5 369,200 - +0.2 369,335 + -0.4 369,335 + -0.3 369,384 - +0.9 369,384 - +0.7 369,400 - +0.5 369,400 - +2.1 369,461 + -0.2 369,462 - +0.0 369,491 + +0.6 369,519 + -0.9 369,519 + +0.3 369,535 + +1.4 369,535 + -0.2 369,536 - -0.2 369,597 + -0.8 369,597 + -1.0 369,598 - -0.6 369,628 + +0.7 369,656 + -1.4 369,657 - +0.1 369,657 - +1.1 369,657 - -1.8 369,657 - -0.4 369,672 + +1.3 369,673 - -1.6 369,673 - -0.2 369,775 + +0.5 369,895 + Xcc-8004.386.1 0.12 -0.8 370,054 + Xcc-8004.386.1 0.30 +1.2 370,055 - Xcc-8004.386.1 0.30 -0.8 370,055 - Xcc-8004.386.1 0.30 -0.1 370,156 - Xcc-8004.386.1 0.41 -0.5
Or see this region's nucleotide sequence