Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.350.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.349.1 and Xcc-8004.350.1 are separated by 88 nucleotidesXcc-8004.350.1 and Xcc-8004.351.1 are separated by 402 nucleotides Xcc-8004.349.1: Xcc-8004.349.1 - FIG01210302: hypothetical protein, at 334,885 to 335,739 Xcc-8004.349.1 Xcc-8004.350.1: Xcc-8004.350.1 - hypothetical protein, at 335,828 to 335,980 Xcc-8004.350.1 Xcc-8004.351.1: Xcc-8004.351.1 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 336,383 to 336,946 Xcc-8004.351.1 Position (kb) 335 336Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 334.848 kb on + strandat 334.848 kb on + strandat 334.849 kb on - strandat 334.849 kb on - strandat 334.859 kb on + strandat 334.919 kb on + strandat 334.919 kb on + strandat 334.919 kb on + strandat 334.919 kb on + strandat 334.920 kb on - strandat 334.920 kb on - strandat 334.920 kb on - strandat 334.920 kb on - strandat 335.016 kb on + strand, within Xcc-8004.349.1at 335.044 kb on + strand, within Xcc-8004.349.1at 335.044 kb on + strand, within Xcc-8004.349.1at 335.044 kb on + strand, within Xcc-8004.349.1at 335.063 kb on - strand, within Xcc-8004.349.1at 335.167 kb on + strand, within Xcc-8004.349.1at 335.167 kb on + strand, within Xcc-8004.349.1at 335.168 kb on - strand, within Xcc-8004.349.1at 335.188 kb on + strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.189 kb on - strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.299 kb on + strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.300 kb on - strand, within Xcc-8004.349.1at 335.323 kb on + strand, within Xcc-8004.349.1at 335.323 kb on + strand, within Xcc-8004.349.1at 335.323 kb on + strand, within Xcc-8004.349.1at 335.324 kb on - strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.440 kb on + strand, within Xcc-8004.349.1at 335.441 kb on - strand, within Xcc-8004.349.1at 335.441 kb on - strand, within Xcc-8004.349.1at 335.524 kb on + strand, within Xcc-8004.349.1at 335.525 kb on - strand, within Xcc-8004.349.1at 335.525 kb on - strand, within Xcc-8004.349.1at 335.687 kb on - strandat 335.808 kb on + strandat 335.808 kb on + strandat 335.809 kb on - strandat 335.896 kb on - strand, within Xcc-8004.350.1at 335.924 kb on - strand, within Xcc-8004.350.1at 335.924 kb on - strand, within Xcc-8004.350.1at 335.924 kb on - strand, within Xcc-8004.350.1at 335.964 kb on + strand, within Xcc-8004.350.1at 336.014 kb on - strandat 336.041 kb on + strandat 336.041 kb on + strandat 336.041 kb on + strandat 336.050 kb on + strandat 336.050 kb on + strandat 336.050 kb on + strandat 336.050 kb on + strandat 336.051 kb on - strandat 336.051 kb on - strandat 336.051 kb on - strandat 336.051 kb on - strandat 336.054 kb on + strandat 336.054 kb on + strandat 336.054 kb on + strandat 336.055 kb on - strandat 336.094 kb on + strandat 336.101 kb on + strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.102 kb on - strandat 336.107 kb on + strandat 336.107 kb on + strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.108 kb on - strandat 336.244 kb on + strandat 336.245 kb on - strandat 336.407 kb on + strandat 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.489 kb on - strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.596 kb on + strand, within Xcc-8004.351.1at 336.597 kb on - strand, within Xcc-8004.351.1at 336.597 kb on - strand, within Xcc-8004.351.1at 336.597 kb on - strand, within Xcc-8004.351.1at 336.625 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.693 kb on + strand, within Xcc-8004.351.1at 336.694 kb on - strand, within Xcc-8004.351.1at 336.694 kb on - strand, within Xcc-8004.351.1at 336.891 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
remove
334,848 + +0.0
334,848 + +0.2
334,849 - -0.7
334,849 - +0.9
334,859 + +1.2
334,919 + +0.6
334,919 + +1.0
334,919 + -0.6
334,919 + +0.8
334,920 - -0.5
334,920 - -2.3
334,920 - -1.1
334,920 - -0.8
335,016 + Xcc-8004.349.1 0.15 -0.4
335,044 + Xcc-8004.349.1 0.19 -0.4
335,044 + Xcc-8004.349.1 0.19 -0.2
335,044 + Xcc-8004.349.1 0.19 +0.1
335,063 - Xcc-8004.349.1 0.21 +1.8
335,167 + Xcc-8004.349.1 0.33 -0.8
335,167 + Xcc-8004.349.1 0.33 +1.6
335,168 - Xcc-8004.349.1 0.33 -0.1
335,188 + Xcc-8004.349.1 0.35 -1.6
335,189 - Xcc-8004.349.1 0.36 +0.6
335,189 - Xcc-8004.349.1 0.36 +1.8
335,189 - Xcc-8004.349.1 0.36 -0.4
335,189 - Xcc-8004.349.1 0.36 -0.1
335,189 - Xcc-8004.349.1 0.36 -0.1
335,189 - Xcc-8004.349.1 0.36 -0.3
335,189 - Xcc-8004.349.1 0.36 +1.0
335,189 - Xcc-8004.349.1 0.36 -0.2
335,189 - Xcc-8004.349.1 0.36 -0.3
335,189 - Xcc-8004.349.1 0.36 +1.0
335,299 + Xcc-8004.349.1 0.48 -1.8
335,299 + Xcc-8004.349.1 0.48 +0.6
335,299 + Xcc-8004.349.1 0.48 -1.3
335,299 + Xcc-8004.349.1 0.48 -1.3
335,300 - Xcc-8004.349.1 0.49 +0.1
335,300 - Xcc-8004.349.1 0.49 +0.5
335,300 - Xcc-8004.349.1 0.49 -0.5
335,300 - Xcc-8004.349.1 0.49 -0.3
335,323 + Xcc-8004.349.1 0.51 +2.0
335,323 + Xcc-8004.349.1 0.51 +0.9
335,323 + Xcc-8004.349.1 0.51 +0.3
335,324 - Xcc-8004.349.1 0.51 +0.7
335,440 + Xcc-8004.349.1 0.65 +0.9
335,440 + Xcc-8004.349.1 0.65 -0.1
335,440 + Xcc-8004.349.1 0.65 +0.1
335,440 + Xcc-8004.349.1 0.65 -2.6
335,440 + Xcc-8004.349.1 0.65 +1.9
335,440 + Xcc-8004.349.1 0.65 -0.4
335,440 + Xcc-8004.349.1 0.65 -1.4
335,440 + Xcc-8004.349.1 0.65 +0.5
335,441 - Xcc-8004.349.1 0.65 +1.0
335,441 - Xcc-8004.349.1 0.65 -0.2
335,524 + Xcc-8004.349.1 0.75 -1.5
335,525 - Xcc-8004.349.1 0.75 +1.1
335,525 - Xcc-8004.349.1 0.75 +0.8
335,687 - -0.2
335,808 + +0.4
335,808 + -0.8
335,809 - +0.2
335,896 - Xcc-8004.350.1 0.44 -2.5
335,924 - Xcc-8004.350.1 0.63 -0.1
335,924 - Xcc-8004.350.1 0.63 +0.1
335,924 - Xcc-8004.350.1 0.63 -0.9
335,964 + Xcc-8004.350.1 0.89 -0.5
336,014 - -1.3
336,041 + -0.4
336,041 + -0.3
336,041 + +1.1
336,050 + +1.6
336,050 + -0.4
336,050 + +0.6
336,050 + -2.8
336,051 - +0.5
336,051 - +1.5
336,051 - +1.0
336,051 - +0.4
336,054 + +0.2
336,054 + -0.8
336,054 + +0.8
336,055 - -0.1
336,094 + -0.3
336,101 + -0.5
336,102 - -2.1
336,102 - -1.7
336,102 - -0.3
336,102 - -0.5
336,102 - -1.0
336,102 - -0.4
336,107 + -1.2
336,107 + -1.9
336,108 - -0.1
336,108 - -2.4
336,108 - -1.1
336,108 - +1.6
336,108 - -0.4
336,108 - -0.7
336,244 + -0.3
336,245 - +0.5
336,407 + -0.5
336,489 - Xcc-8004.351.1 0.19 +0.8
336,489 - Xcc-8004.351.1 0.19 +0.7
336,489 - Xcc-8004.351.1 0.19 +0.6
336,489 - Xcc-8004.351.1 0.19 +2.8
336,489 - Xcc-8004.351.1 0.19 -0.4
336,596 + Xcc-8004.351.1 0.38 -0.5
336,596 + Xcc-8004.351.1 0.38 +0.5
336,596 + Xcc-8004.351.1 0.38 -1.0
336,596 + Xcc-8004.351.1 0.38 +1.4
336,597 - Xcc-8004.351.1 0.38 -1.4
336,597 - Xcc-8004.351.1 0.38 -2.8
336,597 - Xcc-8004.351.1 0.38 -2.1
336,625 + Xcc-8004.351.1 0.43 +0.0
336,693 + Xcc-8004.351.1 0.55 +0.2
336,693 + Xcc-8004.351.1 0.55 +0.6
336,693 + Xcc-8004.351.1 0.55 +1.2
336,693 + Xcc-8004.351.1 0.55 -0.3
336,693 + Xcc-8004.351.1 0.55 +0.4
336,694 - Xcc-8004.351.1 0.55 -0.9
336,694 - Xcc-8004.351.1 0.55 +1.6
336,891 + +1.4

Or see this region's nucleotide sequence