Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.321.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.319.1 and Xcc-8004.321.1 are separated by 10 nucleotidesXcc-8004.321.1 and Xcc-8004.322.1 are separated by 128 nucleotidesXcc-8004.322.1 and Xcc-8004.323.1 are separated by 85 nucleotides Xcc-8004.319.1: Xcc-8004.319.1 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 310,342 to 311,952 Xcc-8004.319.1 Xcc-8004.321.1: Xcc-8004.321.1 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 311,963 to 313,126 Xcc-8004.321.1 Xcc-8004.322.1: Xcc-8004.322.1 - Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family, at 313,255 to 313,872 Xcc-8004.322.1 Xcc-8004.323.1: Xcc-8004.323.1 - FIG01210738: hypothetical protein, at 313,958 to 314,332 Xcc-8004.323.1 Position (kb) 311 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 311.022 kb on + strand, within Xcc-8004.319.1at 311.022 kb on + strand, within Xcc-8004.319.1at 311.023 kb on - strand, within Xcc-8004.319.1at 311.048 kb on + strand, within Xcc-8004.319.1at 311.048 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.194 kb on + strand, within Xcc-8004.319.1at 311.195 kb on - strand, within Xcc-8004.319.1at 311.195 kb on - strand, within Xcc-8004.319.1at 311.195 kb on - strand, within Xcc-8004.319.1at 311.372 kb on + strand, within Xcc-8004.319.1at 311.373 kb on - strand, within Xcc-8004.319.1at 311.373 kb on - strand, within Xcc-8004.319.1at 311.434 kb on + strand, within Xcc-8004.319.1at 311.434 kb on + strand, within Xcc-8004.319.1at 311.435 kb on - strand, within Xcc-8004.319.1at 311.450 kb on + strand, within Xcc-8004.319.1at 311.451 kb on - strand, within Xcc-8004.319.1at 311.531 kb on + strand, within Xcc-8004.319.1at 311.531 kb on + strand, within Xcc-8004.319.1at 311.531 kb on + strand, within Xcc-8004.319.1at 311.532 kb on - strand, within Xcc-8004.319.1at 311.532 kb on - strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.708 kb on + strand, within Xcc-8004.319.1at 311.708 kb on + strand, within Xcc-8004.319.1at 311.708 kb on + strand, within Xcc-8004.319.1at 311.709 kb on - strand, within Xcc-8004.319.1at 311.709 kb on - strand, within Xcc-8004.319.1at 311.709 kb on - strand, within Xcc-8004.319.1at 312.036 kb on + strandat 312.036 kb on + strandat 312.037 kb on - strandat 312.037 kb on - strandat 312.072 kb on + strandat 312.084 kb on + strand, within Xcc-8004.321.1at 312.084 kb on + strand, within Xcc-8004.321.1at 312.085 kb on - strand, within Xcc-8004.321.1at 312.147 kb on + strand, within Xcc-8004.321.1at 312.147 kb on + strand, within Xcc-8004.321.1at 312.148 kb on - strand, within Xcc-8004.321.1at 312.148 kb on - strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.214 kb on - strand, within Xcc-8004.321.1at 312.214 kb on - strand, within Xcc-8004.321.1at 312.214 kb on - strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.220 kb on - strand, within Xcc-8004.321.1at 312.220 kb on - strand, within Xcc-8004.321.1at 312.220 kb on - strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.606 kb on + strand, within Xcc-8004.321.1at 312.606 kb on + strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.665 kb on + strand, within Xcc-8004.321.1at 312.665 kb on + strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.783 kb on + strand, within Xcc-8004.321.1at 312.783 kb on + strand, within Xcc-8004.321.1at 312.852 kb on + strand, within Xcc-8004.321.1at 312.915 kb on + strand, within Xcc-8004.321.1at 312.916 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 313.042 kb on + strandat 313.043 kb on - strandat 313.043 kb on - strandat 313.197 kb on + strandat 313.197 kb on + strandat 313.198 kb on - strandat 313.223 kb on + strandat 313.234 kb on + strandat 313.234 kb on + strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.262 kb on - strandat 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.585 kb on + strand, within Xcc-8004.322.1at 313.586 kb on - strand, within Xcc-8004.322.1at 313.586 kb on - strand, within Xcc-8004.322.1at 313.925 kb on + strandat 313.925 kb on + strandat 313.925 kb on + strandat 313.926 kb on - strandat 313.926 kb on - strandat 313.926 kb on - strandat 313.927 kb on + strandat 313.928 kb on - strandat 313.928 kb on - strandat 313.998 kb on + strand, within Xcc-8004.323.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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311,022 + Xcc-8004.319.1 0.42 -0.3
311,022 + Xcc-8004.319.1 0.42 -1.1
311,023 - Xcc-8004.319.1 0.42 -1.3
311,048 + Xcc-8004.319.1 0.44 -1.7
311,048 + Xcc-8004.319.1 0.44 -1.3
311,081 + Xcc-8004.319.1 0.46 -2.0
311,081 + Xcc-8004.319.1 0.46 -2.4
311,081 + Xcc-8004.319.1 0.46 -2.0
311,081 + Xcc-8004.319.1 0.46 -1.1
311,082 - Xcc-8004.319.1 0.46 -2.0
311,082 - Xcc-8004.319.1 0.46 -0.0
311,082 - Xcc-8004.319.1 0.46 -2.3
311,082 - Xcc-8004.319.1 0.46 -2.4
311,082 - Xcc-8004.319.1 0.46 -0.3
311,194 + Xcc-8004.319.1 0.53 +1.2
311,195 - Xcc-8004.319.1 0.53 -0.7
311,195 - Xcc-8004.319.1 0.53 -1.2
311,195 - Xcc-8004.319.1 0.53 -2.5
311,372 + Xcc-8004.319.1 0.64 -1.3
311,373 - Xcc-8004.319.1 0.64 -1.9
311,373 - Xcc-8004.319.1 0.64 -0.3
311,434 + Xcc-8004.319.1 0.68 -0.9
311,434 + Xcc-8004.319.1 0.68 -3.0
311,435 - Xcc-8004.319.1 0.68 -2.6
311,450 + Xcc-8004.319.1 0.69 -1.4
311,451 - Xcc-8004.319.1 0.69 -0.2
311,531 + Xcc-8004.319.1 0.74 -1.4
311,531 + Xcc-8004.319.1 0.74 +0.5
311,531 + Xcc-8004.319.1 0.74 -0.4
311,532 - Xcc-8004.319.1 0.74 +0.3
311,532 - Xcc-8004.319.1 0.74 -1.5
311,603 + Xcc-8004.319.1 0.78 -0.2
311,603 + Xcc-8004.319.1 0.78 -0.5
311,603 + Xcc-8004.319.1 0.78 -1.0
311,603 + Xcc-8004.319.1 0.78 -0.5
311,603 + Xcc-8004.319.1 0.78 +2.8
311,603 + Xcc-8004.319.1 0.78 -0.2
311,603 + Xcc-8004.319.1 0.78 -0.1
311,603 + Xcc-8004.319.1 0.78 -2.0
311,604 - Xcc-8004.319.1 0.78 -1.8
311,604 - Xcc-8004.319.1 0.78 -2.1
311,604 - Xcc-8004.319.1 0.78 -1.7
311,604 - Xcc-8004.319.1 0.78 -0.2
311,604 - Xcc-8004.319.1 0.78 +2.1
311,604 - Xcc-8004.319.1 0.78 -2.3
311,708 + Xcc-8004.319.1 0.85 -0.5
311,708 + Xcc-8004.319.1 0.85 -0.5
311,708 + Xcc-8004.319.1 0.85 -1.3
311,709 - Xcc-8004.319.1 0.85 -0.8
311,709 - Xcc-8004.319.1 0.85 -0.3
311,709 - Xcc-8004.319.1 0.85 -1.7
312,036 + -0.5
312,036 + -0.9
312,037 - -1.8
312,037 - +0.5
312,072 + -0.4
312,084 + Xcc-8004.321.1 0.10 +0.9
312,084 + Xcc-8004.321.1 0.10 -0.9
312,085 - Xcc-8004.321.1 0.10 -0.6
312,147 + Xcc-8004.321.1 0.16 -1.9
312,147 + Xcc-8004.321.1 0.16 -1.1
312,148 - Xcc-8004.321.1 0.16 -2.3
312,148 - Xcc-8004.321.1 0.16 -1.8
312,213 + Xcc-8004.321.1 0.21 -2.3
312,213 + Xcc-8004.321.1 0.21 -1.9
312,213 + Xcc-8004.321.1 0.21 -1.2
312,213 + Xcc-8004.321.1 0.21 -1.0
312,213 + Xcc-8004.321.1 0.21 -2.0
312,214 - Xcc-8004.321.1 0.22 -0.6
312,214 - Xcc-8004.321.1 0.22 -0.8
312,214 - Xcc-8004.321.1 0.22 +0.4
312,219 + Xcc-8004.321.1 0.22 -1.0
312,219 + Xcc-8004.321.1 0.22 +0.4
312,219 + Xcc-8004.321.1 0.22 +0.4
312,219 + Xcc-8004.321.1 0.22 -2.1
312,219 + Xcc-8004.321.1 0.22 -0.8
312,219 + Xcc-8004.321.1 0.22 -0.4
312,220 - Xcc-8004.321.1 0.22 -1.7
312,220 - Xcc-8004.321.1 0.22 -1.7
312,220 - Xcc-8004.321.1 0.22 -0.6
312,246 + Xcc-8004.321.1 0.24 -3.3
312,246 + Xcc-8004.321.1 0.24 +1.1
312,246 + Xcc-8004.321.1 0.24 -0.6
312,246 + Xcc-8004.321.1 0.24 -1.5
312,246 + Xcc-8004.321.1 0.24 -3.2
312,246 + Xcc-8004.321.1 0.24 -1.0
312,246 + Xcc-8004.321.1 0.24 -2.8
312,246 + Xcc-8004.321.1 0.24 -0.9
312,246 + Xcc-8004.321.1 0.24 -2.4
312,246 + Xcc-8004.321.1 0.24 -0.9
312,246 + Xcc-8004.321.1 0.24 -1.9
312,246 + Xcc-8004.321.1 0.24 -1.4
312,246 + Xcc-8004.321.1 0.24 -2.0
312,246 + Xcc-8004.321.1 0.24 -1.5
312,246 + Xcc-8004.321.1 0.24 -3.0
312,246 + Xcc-8004.321.1 0.24 -2.2
312,246 + Xcc-8004.321.1 0.24 -0.9
312,246 + Xcc-8004.321.1 0.24 -2.8
312,247 - Xcc-8004.321.1 0.24 -1.7
312,247 - Xcc-8004.321.1 0.24 -0.7
312,247 - Xcc-8004.321.1 0.24 -1.2
312,247 - Xcc-8004.321.1 0.24 -1.7
312,247 - Xcc-8004.321.1 0.24 -1.2
312,247 - Xcc-8004.321.1 0.24 -0.6
312,247 - Xcc-8004.321.1 0.24 -1.3
312,247 - Xcc-8004.321.1 0.24 -1.0
312,247 - Xcc-8004.321.1 0.24 -2.1
312,247 - Xcc-8004.321.1 0.24 +0.2
312,321 + Xcc-8004.321.1 0.31 -0.8
312,321 + Xcc-8004.321.1 0.31 -2.8
312,321 + Xcc-8004.321.1 0.31 -0.3
312,322 - Xcc-8004.321.1 0.31 -2.4
312,322 - Xcc-8004.321.1 0.31 -2.3
312,322 - Xcc-8004.321.1 0.31 -1.0
312,322 - Xcc-8004.321.1 0.31 -0.9
312,322 - Xcc-8004.321.1 0.31 +0.8
312,322 - Xcc-8004.321.1 0.31 -0.4
312,322 - Xcc-8004.321.1 0.31 -1.7
312,606 + Xcc-8004.321.1 0.55 -2.1
312,606 + Xcc-8004.321.1 0.55 +0.2
312,607 - Xcc-8004.321.1 0.55 -1.7
312,607 - Xcc-8004.321.1 0.55 +0.7
312,607 - Xcc-8004.321.1 0.55 -1.3
312,607 - Xcc-8004.321.1 0.55 -2.0
312,665 + Xcc-8004.321.1 0.60 -1.4
312,665 + Xcc-8004.321.1 0.60 -0.1
312,666 - Xcc-8004.321.1 0.60 -1.0
312,666 - Xcc-8004.321.1 0.60 -2.4
312,666 - Xcc-8004.321.1 0.60 -2.6
312,666 - Xcc-8004.321.1 0.60 -3.1
312,666 - Xcc-8004.321.1 0.60 -1.1
312,783 + Xcc-8004.321.1 0.70 -1.9
312,783 + Xcc-8004.321.1 0.70 -0.6
312,852 + Xcc-8004.321.1 0.76 -1.0
312,915 + Xcc-8004.321.1 0.82 -0.7
312,916 - Xcc-8004.321.1 0.82 -1.5
312,937 - Xcc-8004.321.1 0.84 -3.8
312,937 - Xcc-8004.321.1 0.84 -0.8
312,937 - Xcc-8004.321.1 0.84 -0.5
312,937 - Xcc-8004.321.1 0.84 +0.2
312,937 - Xcc-8004.321.1 0.84 -3.5
312,937 - Xcc-8004.321.1 0.84 +2.8
312,937 - Xcc-8004.321.1 0.84 +0.8
313,042 + +1.3
313,043 - -2.6
313,043 - -0.4
313,197 + +0.3
313,197 + -1.2
313,198 - -1.8
313,223 + -1.7
313,234 + -0.9
313,234 + -0.1
313,235 - -0.4
313,235 - -0.1
313,235 - +1.5
313,235 - +0.4
313,235 - -1.5
313,261 + +2.3
313,261 + -0.2
313,261 + -0.2
313,262 - -2.8
313,585 + Xcc-8004.322.1 0.53 -0.4
313,585 + Xcc-8004.322.1 0.53 -0.5
313,585 + Xcc-8004.322.1 0.53 +0.2
313,585 + Xcc-8004.322.1 0.53 +3.6
313,585 + Xcc-8004.322.1 0.53 +0.3
313,585 + Xcc-8004.322.1 0.53 +0.3
313,586 - Xcc-8004.322.1 0.54 -2.5
313,586 - Xcc-8004.322.1 0.54 +0.3
313,925 + +0.3
313,925 + -0.1
313,925 + +0.7
313,926 - -1.1
313,926 - +0.3
313,926 - -0.8
313,927 + -1.7
313,928 - -1.5
313,928 - +0.2
313,998 + Xcc-8004.323.1 0.11 -0.5

Or see this region's nucleotide sequence