Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3196.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3195.1 and Xcc-8004.3196.1 are separated by 192 nucleotidesXcc-8004.3196.1 and Xcc-8004.3197.1 are separated by 22 nucleotides Xcc-8004.3195.1: Xcc-8004.3195.1 - RecA-superfamily ATPases implicated in signal transduction, at 3,110,175 to 3,111,671 Xcc-8004.3195.1 Xcc-8004.3196.1: Xcc-8004.3196.1 - response regulator, at 3,111,864 to 3,112,238 Xcc-8004.3196.1 Xcc-8004.3197.1: Xcc-8004.3197.1 - Histidine kinase/response regulator hybrid protein, at 3,112,261 to 3,115,128 Xcc-8004.3197.1 Position (kb) 3111 3112 3113Strain fitness (log2 ratio) -2 -1 0 1 2at 3110.864 kb on + strand, within Xcc-8004.3195.1at 3110.864 kb on + strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.865 kb on - strand, within Xcc-8004.3195.1at 3110.977 kb on + strand, within Xcc-8004.3195.1at 3110.978 kb on - strand, within Xcc-8004.3195.1at 3111.016 kb on + strand, within Xcc-8004.3195.1at 3111.125 kb on + strand, within Xcc-8004.3195.1at 3111.125 kb on + strand, within Xcc-8004.3195.1at 3111.126 kb on - strand, within Xcc-8004.3195.1at 3111.126 kb on - strand, within Xcc-8004.3195.1at 3111.126 kb on - strand, within Xcc-8004.3195.1at 3111.126 kb on - strand, within Xcc-8004.3195.1at 3111.189 kb on - strand, within Xcc-8004.3195.1at 3111.189 kb on - strand, within Xcc-8004.3195.1at 3111.425 kb on + strand, within Xcc-8004.3195.1at 3111.425 kb on + strand, within Xcc-8004.3195.1at 3111.425 kb on + strand, within Xcc-8004.3195.1at 3111.426 kb on - strand, within Xcc-8004.3195.1at 3111.426 kb on - strand, within Xcc-8004.3195.1at 3111.502 kb on + strand, within Xcc-8004.3195.1at 3111.502 kb on + strand, within Xcc-8004.3195.1at 3111.502 kb on + strand, within Xcc-8004.3195.1at 3111.502 kb on + strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.503 kb on - strand, within Xcc-8004.3195.1at 3111.592 kb on + strandat 3111.592 kb on + strandat 3111.592 kb on + strandat 3111.657 kb on - strandat 3111.687 kb on + strandat 3111.688 kb on - strandat 3111.688 kb on - strandat 3111.688 kb on - strandat 3111.701 kb on + strandat 3111.702 kb on - strandat 3111.728 kb on - strandat 3111.728 kb on - strandat 3111.814 kb on + strandat 3111.814 kb on + strandat 3111.957 kb on + strand, within Xcc-8004.3196.1at 3111.957 kb on + strand, within Xcc-8004.3196.1at 3111.957 kb on + strand, within Xcc-8004.3196.1at 3111.958 kb on - strand, within Xcc-8004.3196.1at 3112.003 kb on + strand, within Xcc-8004.3196.1at 3112.003 kb on + strand, within Xcc-8004.3196.1at 3112.003 kb on + strand, within Xcc-8004.3196.1at 3112.004 kb on - strand, within Xcc-8004.3196.1at 3112.004 kb on - strand, within Xcc-8004.3196.1at 3112.004 kb on - strand, within Xcc-8004.3196.1at 3112.004 kb on - strand, within Xcc-8004.3196.1at 3112.040 kb on + strand, within Xcc-8004.3196.1at 3112.040 kb on + strand, within Xcc-8004.3196.1at 3112.040 kb on + strand, within Xcc-8004.3196.1at 3112.041 kb on - strand, within Xcc-8004.3196.1at 3112.095 kb on + strand, within Xcc-8004.3196.1at 3112.096 kb on - strand, within Xcc-8004.3196.1at 3112.096 kb on - strand, within Xcc-8004.3196.1at 3112.096 kb on - strand, within Xcc-8004.3196.1at 3112.236 kb on + strandat 3112.237 kb on - strandat 3112.237 kb on - strandat 3112.476 kb on + strandat 3112.476 kb on + strandat 3112.476 kb on + strandat 3112.477 kb on - strandat 3112.724 kb on + strand, within Xcc-8004.3197.1at 3112.724 kb on + strand, within Xcc-8004.3197.1at 3112.724 kb on + strand, within Xcc-8004.3197.1at 3112.725 kb on - strand, within Xcc-8004.3197.1at 3112.799 kb on + strand, within Xcc-8004.3197.1at 3112.799 kb on + strand, within Xcc-8004.3197.1at 3112.799 kb on + strand, within Xcc-8004.3197.1at 3112.799 kb on + strand, within Xcc-8004.3197.1at 3112.799 kb on + strand, within Xcc-8004.3197.1at 3112.800 kb on - strand, within Xcc-8004.3197.1at 3112.800 kb on - strand, within Xcc-8004.3197.1at 3112.800 kb on - strand, within Xcc-8004.3197.1at 3112.800 kb on - strand, within Xcc-8004.3197.1at 3112.925 kb on + strand, within Xcc-8004.3197.1at 3112.925 kb on + strand, within Xcc-8004.3197.1at 3112.925 kb on + strand, within Xcc-8004.3197.1at 3112.925 kb on + strand, within Xcc-8004.3197.1at 3112.925 kb on + strand, within Xcc-8004.3197.1at 3112.925 kb on + strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1at 3112.926 kb on - strand, within Xcc-8004.3197.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,110,864 + Xcc-8004.3195.1 0.46 +0.1
3,110,864 + Xcc-8004.3195.1 0.46 +1.8
3,110,865 - Xcc-8004.3195.1 0.46 +0.3
3,110,865 - Xcc-8004.3195.1 0.46 +0.5
3,110,865 - Xcc-8004.3195.1 0.46 -1.4
3,110,865 - Xcc-8004.3195.1 0.46 +0.4
3,110,865 - Xcc-8004.3195.1 0.46 -1.6
3,110,865 - Xcc-8004.3195.1 0.46 -0.4
3,110,865 - Xcc-8004.3195.1 0.46 +0.3
3,110,977 + Xcc-8004.3195.1 0.54 +0.3
3,110,978 - Xcc-8004.3195.1 0.54 -0.6
3,111,016 + Xcc-8004.3195.1 0.56 +0.2
3,111,125 + Xcc-8004.3195.1 0.63 +1.4
3,111,125 + Xcc-8004.3195.1 0.63 -0.6
3,111,126 - Xcc-8004.3195.1 0.64 +1.4
3,111,126 - Xcc-8004.3195.1 0.64 +0.4
3,111,126 - Xcc-8004.3195.1 0.64 -2.0
3,111,126 - Xcc-8004.3195.1 0.64 +0.7
3,111,189 - Xcc-8004.3195.1 0.68 +1.3
3,111,189 - Xcc-8004.3195.1 0.68 +0.1
3,111,425 + Xcc-8004.3195.1 0.84 -2.0
3,111,425 + Xcc-8004.3195.1 0.84 +0.9
3,111,425 + Xcc-8004.3195.1 0.84 -0.9
3,111,426 - Xcc-8004.3195.1 0.84 +0.8
3,111,426 - Xcc-8004.3195.1 0.84 +0.3
3,111,502 + Xcc-8004.3195.1 0.89 +1.9
3,111,502 + Xcc-8004.3195.1 0.89 +1.0
3,111,502 + Xcc-8004.3195.1 0.89 -0.7
3,111,502 + Xcc-8004.3195.1 0.89 +0.5
3,111,503 - Xcc-8004.3195.1 0.89 +0.7
3,111,503 - Xcc-8004.3195.1 0.89 +0.1
3,111,503 - Xcc-8004.3195.1 0.89 +1.6
3,111,503 - Xcc-8004.3195.1 0.89 +0.4
3,111,503 - Xcc-8004.3195.1 0.89 +0.1
3,111,503 - Xcc-8004.3195.1 0.89 -1.4
3,111,503 - Xcc-8004.3195.1 0.89 +0.3
3,111,503 - Xcc-8004.3195.1 0.89 -0.4
3,111,503 - Xcc-8004.3195.1 0.89 -0.8
3,111,592 + +0.4
3,111,592 + -0.4
3,111,592 + -1.4
3,111,657 - +0.5
3,111,687 + +1.2
3,111,688 - -0.5
3,111,688 - +1.1
3,111,688 - +0.7
3,111,701 + +0.7
3,111,702 - +0.5
3,111,728 - +0.3
3,111,728 - +2.4
3,111,814 + +1.2
3,111,814 + +1.7
3,111,957 + Xcc-8004.3196.1 0.25 -0.1
3,111,957 + Xcc-8004.3196.1 0.25 -1.0
3,111,957 + Xcc-8004.3196.1 0.25 -0.6
3,111,958 - Xcc-8004.3196.1 0.25 -0.8
3,112,003 + Xcc-8004.3196.1 0.37 +0.2
3,112,003 + Xcc-8004.3196.1 0.37 -1.1
3,112,003 + Xcc-8004.3196.1 0.37 -1.9
3,112,004 - Xcc-8004.3196.1 0.37 -2.4
3,112,004 - Xcc-8004.3196.1 0.37 -1.2
3,112,004 - Xcc-8004.3196.1 0.37 -0.4
3,112,004 - Xcc-8004.3196.1 0.37 -1.1
3,112,040 + Xcc-8004.3196.1 0.47 +0.6
3,112,040 + Xcc-8004.3196.1 0.47 -0.1
3,112,040 + Xcc-8004.3196.1 0.47 -1.2
3,112,041 - Xcc-8004.3196.1 0.47 +0.2
3,112,095 + Xcc-8004.3196.1 0.62 -0.3
3,112,096 - Xcc-8004.3196.1 0.62 -1.6
3,112,096 - Xcc-8004.3196.1 0.62 -1.4
3,112,096 - Xcc-8004.3196.1 0.62 -1.9
3,112,236 + -2.7
3,112,237 - +0.5
3,112,237 - +0.4
3,112,476 + +0.4
3,112,476 + -0.1
3,112,476 + -2.4
3,112,477 - +1.2
3,112,724 + Xcc-8004.3197.1 0.16 +0.0
3,112,724 + Xcc-8004.3197.1 0.16 -0.9
3,112,724 + Xcc-8004.3197.1 0.16 +0.6
3,112,725 - Xcc-8004.3197.1 0.16 -1.0
3,112,799 + Xcc-8004.3197.1 0.19 -0.4
3,112,799 + Xcc-8004.3197.1 0.19 +0.1
3,112,799 + Xcc-8004.3197.1 0.19 -2.4
3,112,799 + Xcc-8004.3197.1 0.19 -1.9
3,112,799 + Xcc-8004.3197.1 0.19 -0.1
3,112,800 - Xcc-8004.3197.1 0.19 -0.1
3,112,800 - Xcc-8004.3197.1 0.19 +0.7
3,112,800 - Xcc-8004.3197.1 0.19 +2.0
3,112,800 - Xcc-8004.3197.1 0.19 -0.2
3,112,925 + Xcc-8004.3197.1 0.23 -1.6
3,112,925 + Xcc-8004.3197.1 0.23 -0.4
3,112,925 + Xcc-8004.3197.1 0.23 +0.6
3,112,925 + Xcc-8004.3197.1 0.23 +1.6
3,112,925 + Xcc-8004.3197.1 0.23 -1.1
3,112,925 + Xcc-8004.3197.1 0.23 +1.6
3,112,926 - Xcc-8004.3197.1 0.23 +0.6
3,112,926 - Xcc-8004.3197.1 0.23 +1.7
3,112,926 - Xcc-8004.3197.1 0.23 -2.0
3,112,926 - Xcc-8004.3197.1 0.23 -0.1
3,112,926 - Xcc-8004.3197.1 0.23 -0.9
3,112,926 - Xcc-8004.3197.1 0.23 +1.3
3,112,926 - Xcc-8004.3197.1 0.23 +0.9
3,112,926 - Xcc-8004.3197.1 0.23 -0.7
3,112,926 - Xcc-8004.3197.1 0.23 -1.3
3,112,926 - Xcc-8004.3197.1 0.23 -0.0

Or see this region's nucleotide sequence