Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.304.1 and Xcc-8004.305.1 are separated by 88 nucleotides Xcc-8004.305.1 and Xcc-8004.306.1 are separated by 221 nucleotides Xcc-8004.306.1 and Xcc-8004.308.1 are separated by 40 nucleotides Xcc-8004.308.1 and Xcc-8004.309.1 are separated by 46 nucleotides
Xcc-8004.304.1: Xcc-8004.304.1 - Outer membrane protein romA, at 292,774 to 293,826
Xcc-8004.304.1
Xcc-8004.305.1: Xcc-8004.305.1 - hypothetical protein, at 293,915 to 294,547
Xcc-8004.305.1
Xcc-8004.306.1: Xcc-8004.306.1 - Glyoxalase family protein, at 294,769 to 295,143
Xcc-8004.306.1
Xcc-8004.308.1: Xcc-8004.308.1 - hypothetical protein, at 295,184 to 295,909
Xcc-8004.308.1
Xcc-8004.309.1: Xcc-8004.309.1 - Chromosome initiation inhibitor, at 295,956 to 296,912
Xcc-8004.309.1
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 293.805 kb on - strand at 293.805 kb on - strand at 293.805 kb on - strand at 293.856 kb on - strand at 293.856 kb on - strand at 293.869 kb on + strand at 293.890 kb on - strand at 293.903 kb on + strand at 294.077 kb on + strand, within Xcc-8004.305.1 at 294.077 kb on + strand, within Xcc-8004.305.1 at 294.077 kb on + strand, within Xcc-8004.305.1 at 294.077 kb on + strand, within Xcc-8004.305.1 at 294.078 kb on - strand, within Xcc-8004.305.1 at 294.078 kb on - strand, within Xcc-8004.305.1 at 294.078 kb on - strand, within Xcc-8004.305.1 at 294.129 kb on + strand, within Xcc-8004.305.1 at 294.130 kb on - strand, within Xcc-8004.305.1 at 294.130 kb on - strand, within Xcc-8004.305.1 at 294.164 kb on + strand, within Xcc-8004.305.1 at 294.164 kb on + strand, within Xcc-8004.305.1 at 294.165 kb on - strand, within Xcc-8004.305.1 at 294.607 kb on - strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.633 kb on + strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.634 kb on - strand at 294.771 kb on - strand at 294.771 kb on - strand at 294.798 kb on - strand at 294.995 kb on + strand, within Xcc-8004.306.1 at 294.995 kb on + strand, within Xcc-8004.306.1 at 294.996 kb on - strand, within Xcc-8004.306.1 at 295.007 kb on + strand, within Xcc-8004.306.1 at 295.007 kb on + strand, within Xcc-8004.306.1 at 295.040 kb on + strand, within Xcc-8004.306.1 at 295.040 kb on + strand, within Xcc-8004.306.1 at 295.040 kb on + strand, within Xcc-8004.306.1 at 295.086 kb on - strand, within Xcc-8004.306.1 at 295.086 kb on - strand, within Xcc-8004.306.1 at 295.086 kb on - strand, within Xcc-8004.306.1 at 295.086 kb on - strand, within Xcc-8004.306.1 at 295.247 kb on + strand at 295.247 kb on + strand at 295.248 kb on - strand at 295.368 kb on + strand, within Xcc-8004.308.1 at 295.887 kb on + strand at 295.888 kb on - strand at 295.888 kb on - strand at 295.934 kb on + strand at 295.934 kb on + strand at 295.934 kb on + strand at 295.934 kb on + strand at 295.934 kb on + strand at 295.934 kb on + strand at 295.935 kb on - strand at 295.935 kb on - strand at 295.935 kb on - strand at 295.946 kb on + strand at 295.985 kb on - strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.050 kb on + strand at 296.051 kb on - strand at 296.051 kb on - strand at 296.051 kb on - strand at 296.051 kb on - strand at 296.078 kb on - strand, within Xcc-8004.309.1 at 296.078 kb on - strand, within Xcc-8004.309.1 at 296.078 kb on - strand, within Xcc-8004.309.1 at 296.095 kb on + strand, within Xcc-8004.309.1 at 296.095 kb on + strand, within Xcc-8004.309.1 at 296.095 kb on + strand, within Xcc-8004.309.1 at 296.096 kb on - strand, within Xcc-8004.309.1 at 296.096 kb on - strand, within Xcc-8004.309.1 at 296.096 kb on - strand, within Xcc-8004.309.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 293,805 - +0.2 293,805 - +0.8 293,805 - -0.4 293,856 - -0.9 293,856 - -2.5 293,869 + -1.8 293,890 - +1.1 293,903 + +2.1 294,077 + Xcc-8004.305.1 0.26 -1.5 294,077 + Xcc-8004.305.1 0.26 +2.0 294,077 + Xcc-8004.305.1 0.26 +1.3 294,077 + Xcc-8004.305.1 0.26 -0.3 294,078 - Xcc-8004.305.1 0.26 +0.6 294,078 - Xcc-8004.305.1 0.26 +0.2 294,078 - Xcc-8004.305.1 0.26 -1.1 294,129 + Xcc-8004.305.1 0.34 -1.2 294,130 - Xcc-8004.305.1 0.34 +1.1 294,130 - Xcc-8004.305.1 0.34 +1.9 294,164 + Xcc-8004.305.1 0.39 +0.5 294,164 + Xcc-8004.305.1 0.39 +1.2 294,165 - Xcc-8004.305.1 0.39 -1.2 294,607 - +0.1 294,633 + +1.1 294,633 + +0.2 294,633 + -0.7 294,633 + -0.1 294,633 + -0.4 294,633 + +0.2 294,633 + -0.7 294,633 + -0.6 294,633 + -1.9 294,633 + +0.1 294,633 + -1.3 294,633 + -1.9 294,633 + +0.5 294,633 + -0.5 294,633 + -0.9 294,634 - +1.3 294,634 - -1.7 294,634 - +0.5 294,634 - -0.5 294,634 - -0.3 294,634 - -0.3 294,634 - -0.4 294,634 - -1.6 294,634 - -0.1 294,634 - -0.9 294,634 - +1.4 294,634 - -0.7 294,771 - -0.9 294,771 - -0.4 294,798 - +0.5 294,995 + Xcc-8004.306.1 0.60 -0.4 294,995 + Xcc-8004.306.1 0.60 -0.5 294,996 - Xcc-8004.306.1 0.61 +0.3 295,007 + Xcc-8004.306.1 0.63 +0.6 295,007 + Xcc-8004.306.1 0.63 +0.3 295,040 + Xcc-8004.306.1 0.72 +0.3 295,040 + Xcc-8004.306.1 0.72 -1.6 295,040 + Xcc-8004.306.1 0.72 +0.2 295,086 - Xcc-8004.306.1 0.85 -0.5 295,086 - Xcc-8004.306.1 0.85 -0.9 295,086 - Xcc-8004.306.1 0.85 -0.0 295,086 - Xcc-8004.306.1 0.85 -0.6 295,247 + -0.4 295,247 + +1.2 295,248 - -0.6 295,368 + Xcc-8004.308.1 0.25 -0.7 295,887 + -0.8 295,888 - +0.4 295,888 - +1.1 295,934 + +1.8 295,934 + -0.0 295,934 + -0.1 295,934 + -2.4 295,934 + +1.6 295,934 + -0.4 295,935 - -1.4 295,935 - -0.5 295,935 - +0.5 295,946 + +1.2 295,985 - +0.1 296,050 + -0.4 296,050 + +1.6 296,050 + -1.7 296,050 + -2.9 296,050 + -0.3 296,050 + -0.8 296,050 + +0.6 296,050 + +1.7 296,051 - -0.0 296,051 - -0.1 296,051 - +1.7 296,051 - -0.0 296,078 - Xcc-8004.309.1 0.13 -3.1 296,078 - Xcc-8004.309.1 0.13 -1.4 296,078 - Xcc-8004.309.1 0.13 -1.4 296,095 + Xcc-8004.309.1 0.15 -0.5 296,095 + Xcc-8004.309.1 0.15 +1.5 296,095 + Xcc-8004.309.1 0.15 +0.3 296,096 - Xcc-8004.309.1 0.15 +1.1 296,096 - Xcc-8004.309.1 0.15 +1.6 296,096 - Xcc-8004.309.1 0.15 -0.3
Or see this region's nucleotide sequence