Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2529.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2527.1 and Xcc-8004.2528.1 overlap by 4 nucleotidesXcc-8004.2528.1 and Xcc-8004.2529.1 overlap by 4 nucleotidesXcc-8004.2529.1 and Xcc-8004.2530.1 are separated by 10 nucleotidesXcc-8004.2530.1 and Xcc-8004.2532.1 are separated by 16 nucleotidesXcc-8004.2532.1 and Xcc-8004.2533.1 overlap by 4 nucleotides Xcc-8004.2527.1: Xcc-8004.2527.1 - FIG01212985: hypothetical protein, at 2,450,114 to 2,451,040 Xcc-8004.2527.1 Xcc-8004.2528.1: Xcc-8004.2528.1 - Possible exported protein, at 2,451,037 to 2,451,726 Xcc-8004.2528.1 Xcc-8004.2529.1: Xcc-8004.2529.1 - FIG01210734: hypothetical protein, at 2,451,723 to 2,452,133 Xcc-8004.2529.1 Xcc-8004.2530.1: Xcc-8004.2530.1 - FIG01210404: hypothetical protein, at 2,452,144 to 2,452,503 Xcc-8004.2530.1 Xcc-8004.2532.1: Xcc-8004.2532.1 - hypothetical protein, at 2,452,520 to 2,452,753 Xcc-8004.2532.1 Xcc-8004.2533.1: Xcc-8004.2533.1 - Candidate type III effector Hop protein, at 2,452,750 to 2,453,130 Xcc-8004.2533.1 Position (kb) 2451 2452 2453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2450.823 kb on + strand, within Xcc-8004.2527.1at 2450.823 kb on + strand, within Xcc-8004.2527.1at 2450.824 kb on - strand, within Xcc-8004.2527.1at 2450.824 kb on - strand, within Xcc-8004.2527.1at 2450.824 kb on - strand, within Xcc-8004.2527.1at 2450.824 kb on - strand, within Xcc-8004.2527.1at 2450.824 kb on - strand, within Xcc-8004.2527.1at 2450.966 kb on - strandat 2451.026 kb on + strandat 2451.131 kb on + strand, within Xcc-8004.2528.1at 2451.132 kb on - strand, within Xcc-8004.2528.1at 2451.236 kb on + strand, within Xcc-8004.2528.1at 2451.236 kb on + strand, within Xcc-8004.2528.1at 2451.236 kb on + strand, within Xcc-8004.2528.1at 2451.237 kb on - strand, within Xcc-8004.2528.1at 2451.237 kb on - strand, within Xcc-8004.2528.1at 2451.237 kb on - strand, within Xcc-8004.2528.1at 2451.239 kb on + strand, within Xcc-8004.2528.1at 2451.240 kb on - strand, within Xcc-8004.2528.1at 2451.240 kb on - strand, within Xcc-8004.2528.1at 2451.240 kb on - strand, within Xcc-8004.2528.1at 2451.320 kb on + strand, within Xcc-8004.2528.1at 2451.341 kb on + strand, within Xcc-8004.2528.1at 2451.341 kb on + strand, within Xcc-8004.2528.1at 2451.341 kb on + strand, within Xcc-8004.2528.1at 2451.342 kb on - strand, within Xcc-8004.2528.1at 2451.342 kb on - strand, within Xcc-8004.2528.1at 2451.342 kb on - strand, within Xcc-8004.2528.1at 2451.342 kb on - strand, within Xcc-8004.2528.1at 2451.431 kb on + strand, within Xcc-8004.2528.1at 2451.509 kb on + strand, within Xcc-8004.2528.1at 2451.509 kb on + strand, within Xcc-8004.2528.1at 2451.510 kb on - strand, within Xcc-8004.2528.1at 2451.524 kb on + strand, within Xcc-8004.2528.1at 2451.524 kb on + strand, within Xcc-8004.2528.1at 2451.635 kb on - strand, within Xcc-8004.2528.1at 2451.684 kb on + strandat 2451.685 kb on - strandat 2451.785 kb on + strand, within Xcc-8004.2529.1at 2451.851 kb on - strand, within Xcc-8004.2529.1at 2451.860 kb on + strand, within Xcc-8004.2529.1at 2451.860 kb on + strand, within Xcc-8004.2529.1at 2451.860 kb on + strand, within Xcc-8004.2529.1at 2451.861 kb on - strand, within Xcc-8004.2529.1at 2451.861 kb on - strand, within Xcc-8004.2529.1at 2452.145 kb on + strandat 2452.145 kb on + strandat 2452.196 kb on - strand, within Xcc-8004.2530.1at 2452.196 kb on - strand, within Xcc-8004.2530.1at 2452.262 kb on + strand, within Xcc-8004.2530.1at 2452.263 kb on - strand, within Xcc-8004.2530.1at 2452.263 kb on - strand, within Xcc-8004.2530.1at 2452.271 kb on + strand, within Xcc-8004.2530.1at 2452.271 kb on + strand, within Xcc-8004.2530.1at 2452.280 kb on + strand, within Xcc-8004.2530.1at 2452.280 kb on + strand, within Xcc-8004.2530.1at 2452.281 kb on - strand, within Xcc-8004.2530.1at 2452.281 kb on - strand, within Xcc-8004.2530.1at 2452.346 kb on + strand, within Xcc-8004.2530.1at 2452.346 kb on + strand, within Xcc-8004.2530.1at 2452.346 kb on + strand, within Xcc-8004.2530.1at 2452.346 kb on + strand, within Xcc-8004.2530.1at 2452.346 kb on + strand, within Xcc-8004.2530.1at 2452.347 kb on - strand, within Xcc-8004.2530.1at 2452.347 kb on - strand, within Xcc-8004.2530.1at 2452.347 kb on - strand, within Xcc-8004.2530.1at 2452.366 kb on - strand, within Xcc-8004.2530.1at 2452.366 kb on - strand, within Xcc-8004.2530.1at 2452.491 kb on + strandat 2452.551 kb on + strand, within Xcc-8004.2532.1at 2452.551 kb on + strand, within Xcc-8004.2532.1at 2452.551 kb on + strand, within Xcc-8004.2532.1at 2452.552 kb on - strand, within Xcc-8004.2532.1at 2452.552 kb on - strand, within Xcc-8004.2532.1at 2452.552 kb on - strand, within Xcc-8004.2532.1at 2452.623 kb on + strand, within Xcc-8004.2532.1at 2452.623 kb on + strand, within Xcc-8004.2532.1at 2452.623 kb on + strand, within Xcc-8004.2532.1at 2452.623 kb on + strand, within Xcc-8004.2532.1at 2452.623 kb on + strand, within Xcc-8004.2532.1at 2452.624 kb on - strand, within Xcc-8004.2532.1at 2452.624 kb on - strand, within Xcc-8004.2532.1at 2452.806 kb on - strand, within Xcc-8004.2533.1at 2452.922 kb on + strand, within Xcc-8004.2533.1at 2452.922 kb on + strand, within Xcc-8004.2533.1at 2452.922 kb on + strand, within Xcc-8004.2533.1at 2452.922 kb on + strand, within Xcc-8004.2533.1at 2452.947 kb on + strand, within Xcc-8004.2533.1at 2452.947 kb on + strand, within Xcc-8004.2533.1at 2452.948 kb on - strand, within Xcc-8004.2533.1at 2452.948 kb on - strand, within Xcc-8004.2533.1at 2452.948 kb on - strand, within Xcc-8004.2533.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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2,450,823 + Xcc-8004.2527.1 0.76 +0.6
2,450,823 + Xcc-8004.2527.1 0.76 +1.0
2,450,824 - Xcc-8004.2527.1 0.77 -0.1
2,450,824 - Xcc-8004.2527.1 0.77 +0.2
2,450,824 - Xcc-8004.2527.1 0.77 -1.0
2,450,824 - Xcc-8004.2527.1 0.77 +0.1
2,450,824 - Xcc-8004.2527.1 0.77 -1.8
2,450,966 - -0.0
2,451,026 + -0.0
2,451,131 + Xcc-8004.2528.1 0.14 +1.3
2,451,132 - Xcc-8004.2528.1 0.14 +1.1
2,451,236 + Xcc-8004.2528.1 0.29 +0.9
2,451,236 + Xcc-8004.2528.1 0.29 -0.7
2,451,236 + Xcc-8004.2528.1 0.29 +0.2
2,451,237 - Xcc-8004.2528.1 0.29 -1.6
2,451,237 - Xcc-8004.2528.1 0.29 -2.1
2,451,237 - Xcc-8004.2528.1 0.29 -1.4
2,451,239 + Xcc-8004.2528.1 0.29 -0.2
2,451,240 - Xcc-8004.2528.1 0.29 +2.3
2,451,240 - Xcc-8004.2528.1 0.29 +2.0
2,451,240 - Xcc-8004.2528.1 0.29 +0.5
2,451,320 + Xcc-8004.2528.1 0.41 +0.7
2,451,341 + Xcc-8004.2528.1 0.44 +1.8
2,451,341 + Xcc-8004.2528.1 0.44 +0.5
2,451,341 + Xcc-8004.2528.1 0.44 -1.4
2,451,342 - Xcc-8004.2528.1 0.44 -0.8
2,451,342 - Xcc-8004.2528.1 0.44 -1.2
2,451,342 - Xcc-8004.2528.1 0.44 -0.5
2,451,342 - Xcc-8004.2528.1 0.44 -0.4
2,451,431 + Xcc-8004.2528.1 0.57 -0.7
2,451,509 + Xcc-8004.2528.1 0.68 +1.5
2,451,509 + Xcc-8004.2528.1 0.68 -0.5
2,451,510 - Xcc-8004.2528.1 0.69 -3.0
2,451,524 + Xcc-8004.2528.1 0.71 -0.3
2,451,524 + Xcc-8004.2528.1 0.71 +0.2
2,451,635 - Xcc-8004.2528.1 0.87 +1.2
2,451,684 + +1.2
2,451,685 - -0.5
2,451,785 + Xcc-8004.2529.1 0.15 -0.5
2,451,851 - Xcc-8004.2529.1 0.31 -0.4
2,451,860 + Xcc-8004.2529.1 0.33 -1.8
2,451,860 + Xcc-8004.2529.1 0.33 -2.1
2,451,860 + Xcc-8004.2529.1 0.33 -3.2
2,451,861 - Xcc-8004.2529.1 0.34 -2.2
2,451,861 - Xcc-8004.2529.1 0.34 -0.5
2,452,145 + +0.4
2,452,145 + +0.2
2,452,196 - Xcc-8004.2530.1 0.14 -1.8
2,452,196 - Xcc-8004.2530.1 0.14 -0.3
2,452,262 + Xcc-8004.2530.1 0.33 +1.4
2,452,263 - Xcc-8004.2530.1 0.33 -0.3
2,452,263 - Xcc-8004.2530.1 0.33 -0.1
2,452,271 + Xcc-8004.2530.1 0.35 +0.9
2,452,271 + Xcc-8004.2530.1 0.35 +3.1
2,452,280 + Xcc-8004.2530.1 0.38 +0.9
2,452,280 + Xcc-8004.2530.1 0.38 +0.8
2,452,281 - Xcc-8004.2530.1 0.38 -1.6
2,452,281 - Xcc-8004.2530.1 0.38 -1.0
2,452,346 + Xcc-8004.2530.1 0.56 -0.6
2,452,346 + Xcc-8004.2530.1 0.56 +0.7
2,452,346 + Xcc-8004.2530.1 0.56 +1.8
2,452,346 + Xcc-8004.2530.1 0.56 +0.6
2,452,346 + Xcc-8004.2530.1 0.56 -0.0
2,452,347 - Xcc-8004.2530.1 0.56 +0.4
2,452,347 - Xcc-8004.2530.1 0.56 -0.7
2,452,347 - Xcc-8004.2530.1 0.56 -0.2
2,452,366 - Xcc-8004.2530.1 0.62 -2.1
2,452,366 - Xcc-8004.2530.1 0.62 +3.0
2,452,491 + +0.6
2,452,551 + Xcc-8004.2532.1 0.13 +0.6
2,452,551 + Xcc-8004.2532.1 0.13 +0.6
2,452,551 + Xcc-8004.2532.1 0.13 -0.8
2,452,552 - Xcc-8004.2532.1 0.14 +1.6
2,452,552 - Xcc-8004.2532.1 0.14 -1.8
2,452,552 - Xcc-8004.2532.1 0.14 -1.8
2,452,623 + Xcc-8004.2532.1 0.44 +0.3
2,452,623 + Xcc-8004.2532.1 0.44 -0.6
2,452,623 + Xcc-8004.2532.1 0.44 -0.2
2,452,623 + Xcc-8004.2532.1 0.44 -2.0
2,452,623 + Xcc-8004.2532.1 0.44 +0.9
2,452,624 - Xcc-8004.2532.1 0.44 -0.9
2,452,624 - Xcc-8004.2532.1 0.44 -2.6
2,452,806 - Xcc-8004.2533.1 0.15 -2.3
2,452,922 + Xcc-8004.2533.1 0.45 -0.0
2,452,922 + Xcc-8004.2533.1 0.45 +2.0
2,452,922 + Xcc-8004.2533.1 0.45 +1.5
2,452,922 + Xcc-8004.2533.1 0.45 +0.1
2,452,947 + Xcc-8004.2533.1 0.52 -0.7
2,452,947 + Xcc-8004.2533.1 0.52 +1.7
2,452,948 - Xcc-8004.2533.1 0.52 -0.1
2,452,948 - Xcc-8004.2533.1 0.52 +2.0
2,452,948 - Xcc-8004.2533.1 0.52 +0.0

Or see this region's nucleotide sequence