Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1536.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1534.1 and Xcc-8004.1535.1 are separated by 17 nucleotidesXcc-8004.1535.1 and Xcc-8004.1536.1 are separated by 0 nucleotidesXcc-8004.1536.1 and Xcc-8004.1537.1 overlap by 52 nucleotides Xcc-8004.1534.1: Xcc-8004.1534.1 - Mobile element protein, at 1,473,190 to 1,473,462 Xcc-8004.1534.1 Xcc-8004.1535.1: Xcc-8004.1535.1 - Mobile element protein, at 1,473,480 to 1,474,334 Xcc-8004.1535.1 Xcc-8004.1536.1: Xcc-8004.1536.1 - Virulence protein, at 1,474,335 to 1,474,847 Xcc-8004.1536.1 Xcc-8004.1537.1: Xcc-8004.1537.1 - Virulence protein, at 1,474,796 to 1,476,124 Xcc-8004.1537.1 Position (kb) 1474 1475Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1474.340 kb on + strandat 1474.364 kb on + strandat 1474.377 kb on + strandat 1474.377 kb on + strandat 1474.377 kb on + strandat 1474.377 kb on + strandat 1474.378 kb on - strandat 1474.378 kb on - strandat 1474.378 kb on - strandat 1474.498 kb on + strand, within Xcc-8004.1536.1at 1474.499 kb on - strand, within Xcc-8004.1536.1at 1474.499 kb on - strand, within Xcc-8004.1536.1at 1474.569 kb on - strand, within Xcc-8004.1536.1at 1474.569 kb on - strand, within Xcc-8004.1536.1at 1474.569 kb on - strand, within Xcc-8004.1536.1at 1474.602 kb on + strand, within Xcc-8004.1536.1at 1474.606 kb on + strand, within Xcc-8004.1536.1at 1474.607 kb on - strand, within Xcc-8004.1536.1at 1474.735 kb on - strand, within Xcc-8004.1536.1at 1474.826 kb on + strandat 1474.827 kb on - strandat 1474.835 kb on + strandat 1474.835 kb on + strandat 1474.925 kb on + strandat 1475.004 kb on - strand, within Xcc-8004.1537.1at 1475.006 kb on - strand, within Xcc-8004.1537.1at 1475.006 kb on - strand, within Xcc-8004.1537.1at 1475.006 kb on - strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.168 kb on + strand, within Xcc-8004.1537.1at 1475.169 kb on - strand, within Xcc-8004.1537.1at 1475.169 kb on - strand, within Xcc-8004.1537.1at 1475.169 kb on - strand, within Xcc-8004.1537.1at 1475.169 kb on - strand, within Xcc-8004.1537.1at 1475.169 kb on - strand, within Xcc-8004.1537.1at 1475.169 kb on - strand, within Xcc-8004.1537.1at 1475.228 kb on + strand, within Xcc-8004.1537.1at 1475.288 kb on + strand, within Xcc-8004.1537.1at 1475.489 kb on + strand, within Xcc-8004.1537.1at 1475.490 kb on - strand, within Xcc-8004.1537.1at 1475.538 kb on + strand, within Xcc-8004.1537.1at 1475.538 kb on + strand, within Xcc-8004.1537.1at 1475.539 kb on - strand, within Xcc-8004.1537.1at 1475.539 kb on - strand, within Xcc-8004.1537.1at 1475.562 kb on + strand, within Xcc-8004.1537.1at 1475.563 kb on - strand, within Xcc-8004.1537.1at 1475.563 kb on - strand, within Xcc-8004.1537.1at 1475.641 kb on + strand, within Xcc-8004.1537.1at 1475.641 kb on + strand, within Xcc-8004.1537.1at 1475.641 kb on + strand, within Xcc-8004.1537.1at 1475.642 kb on - strand, within Xcc-8004.1537.1at 1475.726 kb on + strand, within Xcc-8004.1537.1at 1475.726 kb on + strand, within Xcc-8004.1537.1at 1475.726 kb on + strand, within Xcc-8004.1537.1at 1475.727 kb on - strand, within Xcc-8004.1537.1at 1475.727 kb on - strand, within Xcc-8004.1537.1at 1475.727 kb on - strand, within Xcc-8004.1537.1at 1475.727 kb on - strand, within Xcc-8004.1537.1at 1475.727 kb on - strand, within Xcc-8004.1537.1at 1475.729 kb on + strand, within Xcc-8004.1537.1at 1475.729 kb on + strand, within Xcc-8004.1537.1at 1475.730 kb on - strand, within Xcc-8004.1537.1at 1475.730 kb on - strand, within Xcc-8004.1537.1at 1475.730 kb on - strand, within Xcc-8004.1537.1at 1475.732 kb on + strand, within Xcc-8004.1537.1at 1475.733 kb on - strand, within Xcc-8004.1537.1at 1475.733 kb on - strand, within Xcc-8004.1537.1at 1475.768 kb on + strand, within Xcc-8004.1537.1at 1475.789 kb on + strand, within Xcc-8004.1537.1at 1475.807 kb on + strand, within Xcc-8004.1537.1at 1475.807 kb on + strand, within Xcc-8004.1537.1at 1475.808 kb on - strand, within Xcc-8004.1537.1at 1475.809 kb on + strand, within Xcc-8004.1537.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,474,340 + +1.6
1,474,364 + -1.2
1,474,377 + -2.0
1,474,377 + -0.6
1,474,377 + +1.5
1,474,377 + +0.5
1,474,378 - +2.1
1,474,378 - -0.2
1,474,378 - -2.9
1,474,498 + Xcc-8004.1536.1 0.32 -1.2
1,474,499 - Xcc-8004.1536.1 0.32 -1.0
1,474,499 - Xcc-8004.1536.1 0.32 -0.4
1,474,569 - Xcc-8004.1536.1 0.46 -1.9
1,474,569 - Xcc-8004.1536.1 0.46 -1.5
1,474,569 - Xcc-8004.1536.1 0.46 -1.5
1,474,602 + Xcc-8004.1536.1 0.52 -1.0
1,474,606 + Xcc-8004.1536.1 0.53 +2.0
1,474,607 - Xcc-8004.1536.1 0.53 -0.6
1,474,735 - Xcc-8004.1536.1 0.78 +0.2
1,474,826 + +2.3
1,474,827 - -0.5
1,474,835 + +0.3
1,474,835 + -0.4
1,474,925 + +0.3
1,475,004 - Xcc-8004.1537.1 0.16 +0.4
1,475,006 - Xcc-8004.1537.1 0.16 -1.2
1,475,006 - Xcc-8004.1537.1 0.16 +1.0
1,475,006 - Xcc-8004.1537.1 0.16 +0.2
1,475,168 + Xcc-8004.1537.1 0.28 +0.4
1,475,168 + Xcc-8004.1537.1 0.28 +0.2
1,475,168 + Xcc-8004.1537.1 0.28 -0.4
1,475,168 + Xcc-8004.1537.1 0.28 +0.6
1,475,168 + Xcc-8004.1537.1 0.28 -0.6
1,475,168 + Xcc-8004.1537.1 0.28 -1.3
1,475,168 + Xcc-8004.1537.1 0.28 -0.6
1,475,168 + Xcc-8004.1537.1 0.28 -1.4
1,475,168 + Xcc-8004.1537.1 0.28 -0.4
1,475,169 - Xcc-8004.1537.1 0.28 -0.1
1,475,169 - Xcc-8004.1537.1 0.28 +1.6
1,475,169 - Xcc-8004.1537.1 0.28 -1.0
1,475,169 - Xcc-8004.1537.1 0.28 +0.4
1,475,169 - Xcc-8004.1537.1 0.28 -0.7
1,475,169 - Xcc-8004.1537.1 0.28 +0.8
1,475,228 + Xcc-8004.1537.1 0.33 -1.0
1,475,288 + Xcc-8004.1537.1 0.37 -0.4
1,475,489 + Xcc-8004.1537.1 0.52 +0.3
1,475,490 - Xcc-8004.1537.1 0.52 +1.1
1,475,538 + Xcc-8004.1537.1 0.56 +0.0
1,475,538 + Xcc-8004.1537.1 0.56 +1.3
1,475,539 - Xcc-8004.1537.1 0.56 +1.3
1,475,539 - Xcc-8004.1537.1 0.56 -0.4
1,475,562 + Xcc-8004.1537.1 0.58 -0.3
1,475,563 - Xcc-8004.1537.1 0.58 -0.1
1,475,563 - Xcc-8004.1537.1 0.58 +0.2
1,475,641 + Xcc-8004.1537.1 0.64 -0.0
1,475,641 + Xcc-8004.1537.1 0.64 -1.3
1,475,641 + Xcc-8004.1537.1 0.64 -0.4
1,475,642 - Xcc-8004.1537.1 0.64 +0.3
1,475,726 + Xcc-8004.1537.1 0.70 +0.0
1,475,726 + Xcc-8004.1537.1 0.70 +0.3
1,475,726 + Xcc-8004.1537.1 0.70 -0.7
1,475,727 - Xcc-8004.1537.1 0.70 +0.0
1,475,727 - Xcc-8004.1537.1 0.70 -1.8
1,475,727 - Xcc-8004.1537.1 0.70 +0.6
1,475,727 - Xcc-8004.1537.1 0.70 -0.0
1,475,727 - Xcc-8004.1537.1 0.70 +0.5
1,475,729 + Xcc-8004.1537.1 0.70 +0.6
1,475,729 + Xcc-8004.1537.1 0.70 +0.1
1,475,730 - Xcc-8004.1537.1 0.70 +0.8
1,475,730 - Xcc-8004.1537.1 0.70 +1.4
1,475,730 - Xcc-8004.1537.1 0.70 -3.5
1,475,732 + Xcc-8004.1537.1 0.70 +1.9
1,475,733 - Xcc-8004.1537.1 0.71 -0.3
1,475,733 - Xcc-8004.1537.1 0.71 +1.1
1,475,768 + Xcc-8004.1537.1 0.73 +0.4
1,475,789 + Xcc-8004.1537.1 0.75 -2.1
1,475,807 + Xcc-8004.1537.1 0.76 +0.5
1,475,807 + Xcc-8004.1537.1 0.76 +0.2
1,475,808 - Xcc-8004.1537.1 0.76 -0.8
1,475,809 + Xcc-8004.1537.1 0.76 +0.6

Or see this region's nucleotide sequence