Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1088.1 and Xcc-8004.1089.1 overlap by 227 nucleotides Xcc-8004.1089.1 and Xcc-8004.1090.1 overlap by 10 nucleotides Xcc-8004.1090.1 and Xcc-8004.1093.1 are separated by 33 nucleotides
Xcc-8004.1088.1: Xcc-8004.1088.1 - Mobile element protein, at 1,040,519 to 1,041,289
Xcc-8004.1088.1
Xcc-8004.1089.1: Xcc-8004.1089.1 - Mobile element protein, at 1,041,063 to 1,041,494
Xcc-8004.1089.1
Xcc-8004.1090.1: Xcc-8004.1090.1 - hypothetical protein, at 1,041,485 to 1,042,057
Xcc-8004.1090.1
Xcc-8004.1093.1: Xcc-8004.1093.1 - Inner membrane protein of type IV secretion of T-DNA complex, VirB6, at 1,042,091 to 1,043,260
Xcc-8004.1093.1
Position (kb) 1041
1042
1043 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1041.530 kb on + strand at 1041.584 kb on - strand, within Xcc-8004.1090.1 at 1041.687 kb on + strand, within Xcc-8004.1090.1 at 1041.715 kb on + strand, within Xcc-8004.1090.1 at 1041.718 kb on - strand, within Xcc-8004.1090.1 at 1041.718 kb on - strand, within Xcc-8004.1090.1 at 1041.720 kb on + strand, within Xcc-8004.1090.1 at 1041.720 kb on + strand, within Xcc-8004.1090.1 at 1041.725 kb on - strand, within Xcc-8004.1090.1 at 1041.796 kb on + strand, within Xcc-8004.1090.1 at 1041.806 kb on - strand, within Xcc-8004.1090.1 at 1041.822 kb on - strand, within Xcc-8004.1090.1 at 1041.863 kb on - strand, within Xcc-8004.1090.1 at 1041.909 kb on + strand, within Xcc-8004.1090.1 at 1041.909 kb on + strand, within Xcc-8004.1090.1 at 1041.910 kb on - strand, within Xcc-8004.1090.1 at 1041.913 kb on - strand, within Xcc-8004.1090.1 at 1041.943 kb on + strand, within Xcc-8004.1090.1 at 1041.943 kb on + strand, within Xcc-8004.1090.1 at 1042.042 kb on + strand at 1042.043 kb on - strand at 1042.051 kb on + strand at 1042.052 kb on - strand at 1042.057 kb on + strand at 1042.058 kb on - strand at 1042.058 kb on - strand at 1042.058 kb on - strand at 1042.069 kb on + strand at 1042.147 kb on + strand at 1042.216 kb on + strand, within Xcc-8004.1093.1 at 1042.229 kb on - strand, within Xcc-8004.1093.1 at 1042.234 kb on + strand, within Xcc-8004.1093.1 at 1042.234 kb on + strand, within Xcc-8004.1093.1 at 1042.234 kb on + strand, within Xcc-8004.1093.1 at 1042.254 kb on + strand, within Xcc-8004.1093.1 at 1042.254 kb on + strand, within Xcc-8004.1093.1 at 1042.254 kb on + strand, within Xcc-8004.1093.1 at 1042.255 kb on - strand, within Xcc-8004.1093.1 at 1042.255 kb on - strand, within Xcc-8004.1093.1 at 1042.255 kb on - strand, within Xcc-8004.1093.1 at 1042.255 kb on - strand, within Xcc-8004.1093.1 at 1042.350 kb on - strand, within Xcc-8004.1093.1 at 1042.350 kb on - strand, within Xcc-8004.1093.1 at 1042.476 kb on + strand, within Xcc-8004.1093.1 at 1042.476 kb on + strand, within Xcc-8004.1093.1 at 1042.476 kb on + strand, within Xcc-8004.1093.1 at 1042.772 kb on - strand, within Xcc-8004.1093.1 at 1042.807 kb on + strand, within Xcc-8004.1093.1 at 1042.807 kb on + strand, within Xcc-8004.1093.1 at 1042.807 kb on + strand, within Xcc-8004.1093.1 at 1042.807 kb on + strand, within Xcc-8004.1093.1 at 1042.808 kb on - strand, within Xcc-8004.1093.1 at 1042.808 kb on - strand, within Xcc-8004.1093.1 at 1042.808 kb on - strand, within Xcc-8004.1093.1 at 1042.810 kb on - strand, within Xcc-8004.1093.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,041,530 + -0.2 1,041,584 - Xcc-8004.1090.1 0.17 -2.2 1,041,687 + Xcc-8004.1090.1 0.35 +2.8 1,041,715 + Xcc-8004.1090.1 0.40 -0.3 1,041,718 - Xcc-8004.1090.1 0.41 +0.7 1,041,718 - Xcc-8004.1090.1 0.41 +1.2 1,041,720 + Xcc-8004.1090.1 0.41 -1.1 1,041,720 + Xcc-8004.1090.1 0.41 +0.2 1,041,725 - Xcc-8004.1090.1 0.42 -2.0 1,041,796 + Xcc-8004.1090.1 0.54 -2.8 1,041,806 - Xcc-8004.1090.1 0.56 +0.4 1,041,822 - Xcc-8004.1090.1 0.59 -0.9 1,041,863 - Xcc-8004.1090.1 0.66 -1.3 1,041,909 + Xcc-8004.1090.1 0.74 +0.9 1,041,909 + Xcc-8004.1090.1 0.74 -0.4 1,041,910 - Xcc-8004.1090.1 0.74 -2.0 1,041,913 - Xcc-8004.1090.1 0.75 -1.8 1,041,943 + Xcc-8004.1090.1 0.80 -2.1 1,041,943 + Xcc-8004.1090.1 0.80 -0.2 1,042,042 + -0.6 1,042,043 - +0.2 1,042,051 + +1.2 1,042,052 - -0.1 1,042,057 + -0.1 1,042,058 - +4.9 1,042,058 - +0.2 1,042,058 - -0.2 1,042,069 + -1.0 1,042,147 + +0.6 1,042,216 + Xcc-8004.1093.1 0.11 +1.6 1,042,229 - Xcc-8004.1093.1 0.12 +0.8 1,042,234 + Xcc-8004.1093.1 0.12 +1.2 1,042,234 + Xcc-8004.1093.1 0.12 +0.2 1,042,234 + Xcc-8004.1093.1 0.12 +0.0 1,042,254 + Xcc-8004.1093.1 0.14 -1.4 1,042,254 + Xcc-8004.1093.1 0.14 +0.2 1,042,254 + Xcc-8004.1093.1 0.14 -2.1 1,042,255 - Xcc-8004.1093.1 0.14 -1.3 1,042,255 - Xcc-8004.1093.1 0.14 +1.2 1,042,255 - Xcc-8004.1093.1 0.14 -0.4 1,042,255 - Xcc-8004.1093.1 0.14 -0.6 1,042,350 - Xcc-8004.1093.1 0.22 +0.4 1,042,350 - Xcc-8004.1093.1 0.22 +0.6 1,042,476 + Xcc-8004.1093.1 0.33 -0.7 1,042,476 + Xcc-8004.1093.1 0.33 +0.1 1,042,476 + Xcc-8004.1093.1 0.33 +0.1 1,042,772 - Xcc-8004.1093.1 0.58 +0.2 1,042,807 + Xcc-8004.1093.1 0.61 +0.8 1,042,807 + Xcc-8004.1093.1 0.61 +0.7 1,042,807 + Xcc-8004.1093.1 0.61 +1.0 1,042,807 + Xcc-8004.1093.1 0.61 +1.6 1,042,808 - Xcc-8004.1093.1 0.61 +1.0 1,042,808 - Xcc-8004.1093.1 0.61 -0.2 1,042,808 - Xcc-8004.1093.1 0.61 +1.5 1,042,810 - Xcc-8004.1093.1 0.61 +0.3
Or see this region's nucleotide sequence