Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09790 and PGA1_c09800 are separated by 90 nucleotides PGA1_c09800 and PGA1_c09810 are separated by 307 nucleotides
PGA1_c09790: PGA1_c09790 - cold-shock DEAD box protein A, at 1,008,360 to 1,010,501
_c09790
PGA1_c09800: PGA1_c09800 - beta-lactamase Bla, at 1,010,592 to 1,011,485
_c09800
PGA1_c09810: PGA1_c09810 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 1,011,793 to 1,012,416
_c09810
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1009.777 kb on + strand, within PGA1_c09790 at 1009.826 kb on + strand, within PGA1_c09790 at 1009.938 kb on - strand, within PGA1_c09790 at 1009.961 kb on + strand, within PGA1_c09790 at 1009.993 kb on + strand, within PGA1_c09790 at 1010.090 kb on + strand, within PGA1_c09790 at 1010.184 kb on + strand, within PGA1_c09790 at 1010.267 kb on - strand, within PGA1_c09790 at 1010.351 kb on + strand at 1010.351 kb on + strand at 1010.359 kb on - strand at 1010.640 kb on - strand at 1010.662 kb on + strand at 1010.753 kb on + strand, within PGA1_c09800 at 1010.770 kb on - strand, within PGA1_c09800 at 1010.823 kb on + strand, within PGA1_c09800 at 1010.881 kb on + strand, within PGA1_c09800 at 1010.947 kb on + strand, within PGA1_c09800 at 1010.984 kb on - strand, within PGA1_c09800 at 1011.088 kb on + strand, within PGA1_c09800 at 1011.125 kb on + strand, within PGA1_c09800 at 1011.133 kb on - strand, within PGA1_c09800 at 1011.133 kb on - strand, within PGA1_c09800 at 1011.142 kb on + strand, within PGA1_c09800 at 1011.177 kb on + strand, within PGA1_c09800 at 1011.177 kb on + strand, within PGA1_c09800 at 1011.223 kb on - strand, within PGA1_c09800 at 1011.225 kb on + strand, within PGA1_c09800 at 1011.248 kb on + strand, within PGA1_c09800 at 1011.258 kb on + strand, within PGA1_c09800 at 1011.279 kb on + strand, within PGA1_c09800 at 1011.371 kb on + strand, within PGA1_c09800 at 1011.406 kb on - strand at 1011.406 kb on - strand at 1011.406 kb on - strand at 1011.418 kb on + strand at 1011.436 kb on - strand at 1011.438 kb on + strand at 1011.489 kb on + strand at 1011.495 kb on - strand at 1011.497 kb on - strand at 1011.529 kb on + strand at 1011.579 kb on - strand at 1011.605 kb on - strand at 1011.607 kb on + strand at 1011.622 kb on + strand at 1011.627 kb on + strand at 1011.627 kb on + strand at 1011.630 kb on - strand at 1011.635 kb on - strand at 1011.640 kb on + strand at 1011.640 kb on + strand at 1011.640 kb on + strand at 1011.653 kb on - strand at 1011.737 kb on + strand at 1011.803 kb on - strand at 1012.464 kb on + strand at 1012.480 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 1,009,777 + PGA1_c09790 0.66 +1.3 1,009,826 + PGA1_c09790 0.68 +1.2 1,009,938 - PGA1_c09790 0.74 +1.1 1,009,961 + PGA1_c09790 0.75 +1.1 1,009,993 + PGA1_c09790 0.76 -1.7 1,010,090 + PGA1_c09790 0.81 +0.9 1,010,184 + PGA1_c09790 0.85 +0.5 1,010,267 - PGA1_c09790 0.89 +0.1 1,010,351 + -0.9 1,010,351 + +1.5 1,010,359 - +1.5 1,010,640 - -1.1 1,010,662 + -1.0 1,010,753 + PGA1_c09800 0.18 -0.6 1,010,770 - PGA1_c09800 0.20 -0.4 1,010,823 + PGA1_c09800 0.26 -1.4 1,010,881 + PGA1_c09800 0.32 -1.0 1,010,947 + PGA1_c09800 0.40 +0.2 1,010,984 - PGA1_c09800 0.44 -1.5 1,011,088 + PGA1_c09800 0.55 -0.7 1,011,125 + PGA1_c09800 0.60 -0.1 1,011,133 - PGA1_c09800 0.61 -0.9 1,011,133 - PGA1_c09800 0.61 -0.7 1,011,142 + PGA1_c09800 0.62 -1.1 1,011,177 + PGA1_c09800 0.65 -0.9 1,011,177 + PGA1_c09800 0.65 -1.3 1,011,223 - PGA1_c09800 0.71 -0.9 1,011,225 + PGA1_c09800 0.71 -0.0 1,011,248 + PGA1_c09800 0.73 -1.0 1,011,258 + PGA1_c09800 0.74 -0.9 1,011,279 + PGA1_c09800 0.77 -0.5 1,011,371 + PGA1_c09800 0.87 -1.4 1,011,406 - -2.0 1,011,406 - -1.2 1,011,406 - -1.8 1,011,418 + +0.0 1,011,436 - -1.2 1,011,438 + -3.4 1,011,489 + -0.1 1,011,495 - -1.0 1,011,497 - -1.1 1,011,529 + +0.0 1,011,579 - -0.3 1,011,605 - +0.4 1,011,607 + -0.1 1,011,622 + +1.5 1,011,627 + +0.0 1,011,627 + -0.5 1,011,630 - +0.7 1,011,635 - +2.8 1,011,640 + +0.1 1,011,640 + -0.1 1,011,640 + +0.4 1,011,653 - +0.3 1,011,737 + +0.8 1,011,803 - +1.5 1,012,464 + +2.2 1,012,480 + +0.8
Or see this region's nucleotide sequence