Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09310 and PGA1_c09320 are separated by 98 nucleotides PGA1_c09320 and PGA1_c09330 are separated by 1 nucleotides PGA1_c09330 and PGA1_c09340 are separated by 202 nucleotides PGA1_c09340 and PGA1_c09350 are separated by 415 nucleotides
PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457
_c09310
PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194
_c09320
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
PGA1_c09340: PGA1_c09340 - putative transcriptional regulator, AsnC family, at 953,986 to 954,225
_c09340
PGA1_c09350: PGA1_c09350 - aminotransferase class-III, at 954,641 to 955,993
_c09350
Position (kb) 953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 952.214 kb on + strand, within PGA1_c09310 at 952.331 kb on + strand, within PGA1_c09310 at 952.353 kb on + strand, within PGA1_c09310 at 952.381 kb on + strand, within PGA1_c09310 at 952.389 kb on + strand at 952.412 kb on + strand at 952.412 kb on + strand at 952.413 kb on + strand at 952.413 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.425 kb on + strand at 952.425 kb on + strand at 952.450 kb on + strand at 952.452 kb on + strand at 952.469 kb on + strand at 952.523 kb on - strand at 952.523 kb on - strand at 952.561 kb on - strand at 953.820 kb on - strand at 953.837 kb on + strand at 953.973 kb on + strand at 953.979 kb on - strand at 953.979 kb on - strand at 953.981 kb on - strand at 953.981 kb on - strand at 953.994 kb on - strand at 954.030 kb on - strand, within PGA1_c09340 at 954.040 kb on - strand, within PGA1_c09340 at 954.041 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.081 kb on + strand, within PGA1_c09340 at 954.087 kb on + strand, within PGA1_c09340 at 954.165 kb on + strand, within PGA1_c09340 at 954.173 kb on - strand, within PGA1_c09340 at 954.190 kb on - strand, within PGA1_c09340 at 954.198 kb on + strand, within PGA1_c09340 at 954.206 kb on - strand at 954.209 kb on + strand at 954.219 kb on + strand at 954.235 kb on - strand at 954.237 kb on - strand at 954.265 kb on + strand at 954.265 kb on + strand at 954.273 kb on - strand at 954.286 kb on - strand at 954.316 kb on - strand at 954.350 kb on - strand at 954.355 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.396 kb on + strand at 954.399 kb on - strand at 954.456 kb on - strand at 954.466 kb on - strand at 954.467 kb on - strand at 954.525 kb on + strand at 954.525 kb on + strand at 954.536 kb on - strand at 954.608 kb on + strand at 954.616 kb on + strand at 954.616 kb on + strand at 954.663 kb on + strand at 954.663 kb on + strand at 954.681 kb on - strand at 954.707 kb on + strand at 954.715 kb on - strand at 954.715 kb on - strand at 954.717 kb on + strand at 954.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 952,214 + PGA1_c09310 0.67 +0.1 952,331 + PGA1_c09310 0.83 +1.0 952,353 + PGA1_c09310 0.86 +0.4 952,381 + PGA1_c09310 0.89 -0.6 952,389 + +0.1 952,412 + -0.0 952,412 + -0.7 952,413 + +0.0 952,413 + +0.6 952,420 - +0.3 952,420 - -2.3 952,425 + +1.3 952,425 + +1.1 952,450 + -1.3 952,452 + +0.1 952,469 + -0.5 952,523 - -1.4 952,523 - -0.1 952,561 - +0.3 953,820 - -0.0 953,837 + +0.1 953,973 + +0.7 953,979 - -2.2 953,979 - -0.6 953,981 - +0.4 953,981 - -0.3 953,994 - -1.1 954,030 - PGA1_c09340 0.18 -2.2 954,040 - PGA1_c09340 0.23 +0.3 954,041 + PGA1_c09340 0.23 -0.1 954,050 + PGA1_c09340 0.27 -0.1 954,050 + PGA1_c09340 0.27 -0.2 954,050 + PGA1_c09340 0.27 -1.3 954,058 - PGA1_c09340 0.30 +0.2 954,058 - PGA1_c09340 0.30 -0.6 954,081 + PGA1_c09340 0.40 +0.6 954,087 + PGA1_c09340 0.42 -1.0 954,165 + PGA1_c09340 0.75 +0.6 954,173 - PGA1_c09340 0.78 -0.5 954,190 - PGA1_c09340 0.85 -0.7 954,198 + PGA1_c09340 0.88 -0.5 954,206 - -1.2 954,209 + -0.2 954,219 + -0.5 954,235 - -1.3 954,237 - -0.7 954,265 + +0.3 954,265 + +0.1 954,273 - +0.5 954,286 - +0.3 954,316 - +1.1 954,350 - -2.7 954,355 + +0.3 954,391 + +1.2 954,391 + +0.4 954,391 + +0.5 954,391 + +0.0 954,391 + +0.0 954,396 + -1.1 954,399 - -0.2 954,456 - +1.4 954,466 - -0.4 954,467 - -1.1 954,525 + +0.2 954,525 + -0.8 954,536 - +0.4 954,608 + -0.4 954,616 + -0.4 954,616 + -0.3 954,663 + +1.5 954,663 + +1.4 954,681 - +0.6 954,707 + -0.5 954,715 - +0.2 954,715 - +1.4 954,717 + -0.5 954,771 - -0.5
Or see this region's nucleotide sequence