Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09300 and PGA1_c09310 are separated by 101 nucleotides PGA1_c09310 and PGA1_c09320 are separated by 98 nucleotides PGA1_c09320 and PGA1_c09330 are separated by 1 nucleotides PGA1_c09330 and PGA1_c09340 are separated by 202 nucleotides
PGA1_c09300: PGA1_c09300 - Peroxiredoxin, at 951,088 to 951,624
_c09300
PGA1_c09310: PGA1_c09310 - transcription regulator, AraC family, at 951,726 to 952,457
_c09310
PGA1_c09320: PGA1_c09320 - imidazole glycerol phosphate synthase subunit HisH, at 952,556 to 953,194
_c09320
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
PGA1_c09340: PGA1_c09340 - putative transcriptional regulator, AsnC family, at 953,986 to 954,225
_c09340
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 951.556 kb on - strand, within PGA1_c09300 at 951.589 kb on + strand at 951.589 kb on + strand at 951.589 kb on + strand at 951.594 kb on + strand at 951.597 kb on - strand at 951.597 kb on - strand at 951.628 kb on - strand at 951.632 kb on + strand at 951.679 kb on + strand at 951.739 kb on - strand at 951.742 kb on + strand at 951.747 kb on - strand at 951.783 kb on - strand at 951.797 kb on + strand at 951.797 kb on + strand at 951.839 kb on - strand, within PGA1_c09310 at 951.842 kb on + strand, within PGA1_c09310 at 951.882 kb on + strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.895 kb on - strand, within PGA1_c09310 at 951.910 kb on + strand, within PGA1_c09310 at 951.918 kb on - strand, within PGA1_c09310 at 951.984 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 951.990 kb on + strand, within PGA1_c09310 at 952.018 kb on - strand, within PGA1_c09310 at 952.066 kb on - strand, within PGA1_c09310 at 952.125 kb on - strand, within PGA1_c09310 at 952.193 kb on + strand, within PGA1_c09310 at 952.214 kb on + strand, within PGA1_c09310 at 952.331 kb on + strand, within PGA1_c09310 at 952.353 kb on + strand, within PGA1_c09310 at 952.381 kb on + strand, within PGA1_c09310 at 952.389 kb on + strand at 952.412 kb on + strand at 952.412 kb on + strand at 952.413 kb on + strand at 952.413 kb on + strand at 952.420 kb on - strand at 952.420 kb on - strand at 952.425 kb on + strand at 952.425 kb on + strand at 952.450 kb on + strand at 952.452 kb on + strand at 952.469 kb on + strand at 952.523 kb on - strand at 952.523 kb on - strand at 952.561 kb on - strand at 953.820 kb on - strand at 953.837 kb on + strand at 953.973 kb on + strand at 953.979 kb on - strand at 953.979 kb on - strand at 953.981 kb on - strand at 953.981 kb on - strand at 953.994 kb on - strand at 954.030 kb on - strand, within PGA1_c09340 at 954.040 kb on - strand, within PGA1_c09340 at 954.041 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.081 kb on + strand, within PGA1_c09340 at 954.087 kb on + strand, within PGA1_c09340 at 954.165 kb on + strand, within PGA1_c09340 at 954.173 kb on - strand, within PGA1_c09340 at 954.190 kb on - strand, within PGA1_c09340
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 951,556 - PGA1_c09300 0.87 +0.7 951,589 + -0.5 951,589 + -0.4 951,589 + +0.9 951,594 + -1.1 951,597 - -0.6 951,597 - -0.2 951,628 - -0.5 951,632 + -0.2 951,679 + +0.1 951,739 - +0.6 951,742 + +0.1 951,747 - -0.7 951,783 - -1.2 951,797 + +0.1 951,797 + +0.0 951,839 - PGA1_c09310 0.15 -0.4 951,842 + PGA1_c09310 0.16 +0.2 951,882 + PGA1_c09310 0.21 -0.5 951,895 - PGA1_c09310 0.23 -0.7 951,895 - PGA1_c09310 0.23 -0.5 951,910 + PGA1_c09310 0.25 -0.2 951,918 - PGA1_c09310 0.26 +0.3 951,984 + PGA1_c09310 0.35 -0.7 951,990 + PGA1_c09310 0.36 -0.4 951,990 + PGA1_c09310 0.36 +0.7 952,018 - PGA1_c09310 0.40 -0.0 952,066 - PGA1_c09310 0.46 +0.3 952,125 - PGA1_c09310 0.55 -0.3 952,193 + PGA1_c09310 0.64 +0.8 952,214 + PGA1_c09310 0.67 +0.1 952,331 + PGA1_c09310 0.83 +1.0 952,353 + PGA1_c09310 0.86 +0.4 952,381 + PGA1_c09310 0.89 -0.6 952,389 + +0.1 952,412 + -0.0 952,412 + -0.7 952,413 + +0.0 952,413 + +0.6 952,420 - +0.3 952,420 - -2.3 952,425 + +1.3 952,425 + +1.1 952,450 + -1.3 952,452 + +0.1 952,469 + -0.5 952,523 - -1.4 952,523 - -0.1 952,561 - +0.3 953,820 - -0.0 953,837 + +0.1 953,973 + +0.7 953,979 - -2.2 953,979 - -0.6 953,981 - +0.4 953,981 - -0.3 953,994 - -1.1 954,030 - PGA1_c09340 0.18 -2.2 954,040 - PGA1_c09340 0.23 +0.3 954,041 + PGA1_c09340 0.23 -0.1 954,050 + PGA1_c09340 0.27 -0.1 954,050 + PGA1_c09340 0.27 -0.2 954,050 + PGA1_c09340 0.27 -1.3 954,058 - PGA1_c09340 0.30 +0.2 954,058 - PGA1_c09340 0.30 -0.6 954,081 + PGA1_c09340 0.40 +0.6 954,087 + PGA1_c09340 0.42 -1.0 954,165 + PGA1_c09340 0.75 +0.6 954,173 - PGA1_c09340 0.78 -0.5 954,190 - PGA1_c09340 0.85 -0.7
Or see this region's nucleotide sequence