Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08470

Experiment: m.b. Cephalothin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08450 and PGA1_c08460 overlap by 8 nucleotidesPGA1_c08460 and PGA1_c08470 are separated by 17 nucleotidesPGA1_c08470 and PGA1_c08480 are separated by 30 nucleotidesPGA1_c08480 and PGA1_c08490 are separated by 27 nucleotides PGA1_c08450: PGA1_c08450 - Predicted membrane protein (DUF2061)., at 874,611 to 874,817 _c08450 PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754 _c08460 PGA1_c08470: PGA1_c08470 - putative integral membrane protein, at 875,772 to 876,674 _c08470 PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472 _c08480 PGA1_c08490: PGA1_c08490 - Uncharacterized protein conserved in bacteria, at 877,500 to 877,916 _c08490 Position (kb) 875 876 877Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 874.778 kb on + strand, within PGA1_c08450at 874.783 kb on + strand, within PGA1_c08450at 875.012 kb on + strand, within PGA1_c08460at 875.012 kb on + strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.156 kb on + strand, within PGA1_c08460at 875.156 kb on + strand, within PGA1_c08460at 875.162 kb on - strand, within PGA1_c08460at 875.162 kb on - strand, within PGA1_c08460at 875.214 kb on + strand, within PGA1_c08460at 875.214 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.273 kb on - strand, within PGA1_c08460at 875.278 kb on - strand, within PGA1_c08460at 875.278 kb on - strand, within PGA1_c08460at 875.281 kb on + strand, within PGA1_c08460at 875.283 kb on - strand, within PGA1_c08460at 875.299 kb on + strand, within PGA1_c08460at 875.420 kb on - strand, within PGA1_c08460at 875.438 kb on + strand, within PGA1_c08460at 875.526 kb on - strand, within PGA1_c08460at 875.616 kb on + strand, within PGA1_c08460at 875.619 kb on + strand, within PGA1_c08460at 875.635 kb on - strand, within PGA1_c08460at 875.635 kb on - strand, within PGA1_c08460at 875.663 kb on + strandat 875.686 kb on + strandat 875.694 kb on - strandat 875.696 kb on + strandat 875.696 kb on + strandat 875.696 kb on + strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.708 kb on + strandat 875.728 kb on - strandat 875.746 kb on - strandat 875.824 kb on + strandat 875.851 kb on + strandat 875.851 kb on + strandat 875.859 kb on - strandat 875.861 kb on + strandat 875.861 kb on + strandat 875.861 kb on + strandat 875.861 kb on + strandat 875.896 kb on + strand, within PGA1_c08470at 875.904 kb on + strand, within PGA1_c08470at 875.909 kb on + strand, within PGA1_c08470at 875.909 kb on + strand, within PGA1_c08470at 875.912 kb on - strand, within PGA1_c08470at 875.917 kb on - strand, within PGA1_c08470at 875.932 kb on + strand, within PGA1_c08470at 875.946 kb on + strand, within PGA1_c08470at 875.996 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.120 kb on - strand, within PGA1_c08470at 876.130 kb on - strand, within PGA1_c08470at 876.149 kb on - strand, within PGA1_c08470at 876.189 kb on - strand, within PGA1_c08470at 876.199 kb on - strand, within PGA1_c08470at 876.199 kb on - strand, within PGA1_c08470at 876.206 kb on + strand, within PGA1_c08470at 876.208 kb on + strand, within PGA1_c08470at 876.228 kb on + strand, within PGA1_c08470at 876.249 kb on + strand, within PGA1_c08470at 876.301 kb on - strand, within PGA1_c08470at 876.349 kb on + strand, within PGA1_c08470at 876.357 kb on - strand, within PGA1_c08470at 876.386 kb on + strand, within PGA1_c08470at 876.403 kb on - strand, within PGA1_c08470at 876.423 kb on - strand, within PGA1_c08470at 876.434 kb on + strand, within PGA1_c08470at 876.463 kb on + strand, within PGA1_c08470at 876.471 kb on - strand, within PGA1_c08470at 876.540 kb on + strand, within PGA1_c08470at 876.549 kb on - strand, within PGA1_c08470at 876.704 kb on - strandat 876.724 kb on + strandat 876.791 kb on - strand, within PGA1_c08480at 876.862 kb on + strand, within PGA1_c08480at 876.939 kb on + strand, within PGA1_c08480at 877.001 kb on - strand, within PGA1_c08480at 877.107 kb on - strand, within PGA1_c08480at 877.170 kb on + strand, within PGA1_c08480at 877.233 kb on - strand, within PGA1_c08480at 877.423 kb on + strandat 877.558 kb on + strand, within PGA1_c08490at 877.558 kb on + strand, within PGA1_c08490at 877.558 kb on + strand, within PGA1_c08490at 877.558 kb on + strand, within PGA1_c08490at 877.657 kb on + strand, within PGA1_c08490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
remove
874,778 + PGA1_c08450 0.81 -1.0
874,783 + PGA1_c08450 0.83 -1.0
875,012 + PGA1_c08460 0.21 +0.6
875,012 + PGA1_c08460 0.21 +0.4
875,020 - PGA1_c08460 0.22 +1.3
875,020 - PGA1_c08460 0.22 +0.7
875,020 - PGA1_c08460 0.22 -0.3
875,156 + PGA1_c08460 0.37 +0.2
875,156 + PGA1_c08460 0.37 -0.1
875,162 - PGA1_c08460 0.37 -0.5
875,162 - PGA1_c08460 0.37 +1.5
875,214 + PGA1_c08460 0.43 -0.7
875,214 + PGA1_c08460 0.43 +0.6
875,270 + PGA1_c08460 0.49 -2.2
875,270 + PGA1_c08460 0.49 -0.0
875,270 + PGA1_c08460 0.49 +2.4
875,270 + PGA1_c08460 0.49 -0.7
875,273 - PGA1_c08460 0.49 -0.1
875,278 - PGA1_c08460 0.50 -0.6
875,278 - PGA1_c08460 0.50 +0.4
875,281 + PGA1_c08460 0.50 +0.2
875,283 - PGA1_c08460 0.50 -0.9
875,299 + PGA1_c08460 0.52 +0.0
875,420 - PGA1_c08460 0.65 +0.9
875,438 + PGA1_c08460 0.66 -0.1
875,526 - PGA1_c08460 0.76 +0.8
875,616 + PGA1_c08460 0.85 +0.1
875,619 + PGA1_c08460 0.86 -0.1
875,635 - PGA1_c08460 0.87 +0.6
875,635 - PGA1_c08460 0.87 +1.0
875,663 + -0.0
875,686 + -0.8
875,694 - -0.3
875,696 + -0.2
875,696 + +0.1
875,696 + -0.4
875,704 - +1.0
875,704 - -0.5
875,704 - +0.0
875,704 - -2.8
875,704 - -2.0
875,704 - -0.2
875,704 - -2.5
875,704 - +0.4
875,704 - +0.9
875,708 + -0.2
875,728 - +0.5
875,746 - +0.2
875,824 + +0.3
875,851 + +0.2
875,851 + -0.5
875,859 - -1.1
875,861 + -0.5
875,861 + -0.4
875,861 + -0.0
875,861 + -0.9
875,896 + PGA1_c08470 0.14 -0.8
875,904 + PGA1_c08470 0.15 -2.1
875,909 + PGA1_c08470 0.15 +0.8
875,909 + PGA1_c08470 0.15 +1.2
875,912 - PGA1_c08470 0.16 -0.2
875,917 - PGA1_c08470 0.16 -0.5
875,932 + PGA1_c08470 0.18 -1.7
875,946 + PGA1_c08470 0.19 +0.6
875,996 + PGA1_c08470 0.25 -0.3
876,006 + PGA1_c08470 0.26 -0.6
876,006 + PGA1_c08470 0.26 -1.1
876,006 + PGA1_c08470 0.26 +0.2
876,006 + PGA1_c08470 0.26 +0.8
876,006 + PGA1_c08470 0.26 -1.6
876,014 - PGA1_c08470 0.27 -0.6
876,014 - PGA1_c08470 0.27 +0.2
876,014 - PGA1_c08470 0.27 +0.2
876,014 - PGA1_c08470 0.27 -0.2
876,014 - PGA1_c08470 0.27 -1.2
876,120 - PGA1_c08470 0.39 -0.5
876,130 - PGA1_c08470 0.40 +0.7
876,149 - PGA1_c08470 0.42 +0.3
876,189 - PGA1_c08470 0.46 -1.1
876,199 - PGA1_c08470 0.47 -0.8
876,199 - PGA1_c08470 0.47 -0.2
876,206 + PGA1_c08470 0.48 -0.1
876,208 + PGA1_c08470 0.48 +0.2
876,228 + PGA1_c08470 0.50 +0.6
876,249 + PGA1_c08470 0.53 -0.3
876,301 - PGA1_c08470 0.59 +0.0
876,349 + PGA1_c08470 0.64 +0.0
876,357 - PGA1_c08470 0.65 +0.8
876,386 + PGA1_c08470 0.68 +1.0
876,403 - PGA1_c08470 0.70 -0.2
876,423 - PGA1_c08470 0.72 +0.0
876,434 + PGA1_c08470 0.73 -0.9
876,463 + PGA1_c08470 0.77 +0.6
876,471 - PGA1_c08470 0.77 +0.3
876,540 + PGA1_c08470 0.85 -1.4
876,549 - PGA1_c08470 0.86 -0.3
876,704 - +0.1
876,724 + -0.2
876,791 - PGA1_c08480 0.11 +0.2
876,862 + PGA1_c08480 0.20 +0.3
876,939 + PGA1_c08480 0.30 +1.2
877,001 - PGA1_c08480 0.39 +0.7
877,107 - PGA1_c08480 0.52 -0.1
877,170 + PGA1_c08480 0.61 -0.6
877,233 - PGA1_c08480 0.69 +1.3
877,423 + -0.3
877,558 + PGA1_c08490 0.14 -1.7
877,558 + PGA1_c08490 0.14 +0.5
877,558 + PGA1_c08490 0.14 -1.9
877,558 + PGA1_c08490 0.14 -1.6
877,657 + PGA1_c08490 0.38 -0.4

Or see this region's nucleotide sequence