Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06920 and PGA1_c06930 overlap by 11 nucleotides PGA1_c06930 and PGA1_c06940 are separated by 496 nucleotides PGA1_c06940 and PGA1_c06950 are separated by 186 nucleotides PGA1_c06950 and PGA1_c06960 are separated by 99 nucleotides
PGA1_c06920: PGA1_c06920 - hypothetical protein, at 711,835 to 712,371
_c06920
PGA1_c06930: PGA1_c06930 - hypothetical protein, at 712,361 to 712,759
_c06930
PGA1_c06940: PGA1_c06940 - putative adenosylcobalamin(B12)-dependent ribonucleotide reductases, at 713,256 to 715,553
_c06940
PGA1_c06950: PGA1_c06950 - Uncharacterized conserved protein, at 715,740 to 716,171
_c06950
PGA1_c06960: PGA1_c06960 - Uncharacterized protein conserved in bacteria, at 716,271 to 716,588
_c06960
Position (kb) 713
714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2 at 712.300 kb on - strand, within PGA1_c06920 at 712.322 kb on - strand at 712.327 kb on + strand at 712.335 kb on - strand at 712.342 kb on - strand at 712.353 kb on + strand at 712.356 kb on + strand at 712.361 kb on - strand at 712.467 kb on + strand, within PGA1_c06930 at 712.475 kb on - strand, within PGA1_c06930 at 712.479 kb on + strand, within PGA1_c06930 at 712.479 kb on + strand, within PGA1_c06930 at 712.479 kb on + strand, within PGA1_c06930 at 712.501 kb on + strand, within PGA1_c06930 at 712.501 kb on + strand, within PGA1_c06930 at 712.549 kb on + strand, within PGA1_c06930 at 712.549 kb on + strand, within PGA1_c06930 at 712.556 kb on + strand, within PGA1_c06930 at 712.639 kb on + strand, within PGA1_c06930 at 712.639 kb on + strand, within PGA1_c06930 at 712.639 kb on + strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.647 kb on - strand, within PGA1_c06930 at 712.649 kb on + strand, within PGA1_c06930 at 712.649 kb on + strand, within PGA1_c06930 at 712.650 kb on + strand, within PGA1_c06930 at 712.657 kb on - strand, within PGA1_c06930 at 712.657 kb on - strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.700 kb on + strand, within PGA1_c06930 at 712.706 kb on + strand, within PGA1_c06930 at 712.708 kb on - strand, within PGA1_c06930 at 712.714 kb on - strand, within PGA1_c06930 at 712.717 kb on + strand, within PGA1_c06930 at 712.717 kb on + strand, within PGA1_c06930 at 712.717 kb on + strand, within PGA1_c06930 at 712.722 kb on + strand at 712.725 kb on - strand at 712.730 kb on - strand at 712.751 kb on - strand at 712.762 kb on - strand at 712.762 kb on - strand at 712.762 kb on - strand at 712.785 kb on + strand at 712.791 kb on + strand at 712.791 kb on + strand at 712.791 kb on + strand at 712.792 kb on + strand at 712.793 kb on - strand at 712.799 kb on - strand at 712.799 kb on - strand at 712.799 kb on - strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.838 kb on + strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.846 kb on - strand at 712.876 kb on + strand at 712.876 kb on + strand at 712.884 kb on - strand at 712.909 kb on + strand at 712.922 kb on - strand at 712.941 kb on + strand at 712.941 kb on + strand at 712.949 kb on - strand at 712.959 kb on - strand at 712.975 kb on - strand at 712.982 kb on + strand at 712.983 kb on - strand at 713.006 kb on + strand at 713.006 kb on + strand at 713.006 kb on + strand at 713.011 kb on + strand at 713.019 kb on - strand at 713.083 kb on + strand at 713.090 kb on + strand at 713.091 kb on - strand at 713.091 kb on - strand at 713.095 kb on + strand at 713.095 kb on + strand at 713.098 kb on - strand at 713.098 kb on - strand at 713.098 kb on - strand at 713.100 kb on + strand at 713.100 kb on + strand at 713.100 kb on + strand at 713.108 kb on + strand at 713.108 kb on - strand at 713.160 kb on - strand at 713.168 kb on + strand at 713.168 kb on + strand at 713.170 kb on + strand at 713.176 kb on - strand at 713.176 kb on - strand at 713.230 kb on - strand at 713.240 kb on + strand at 713.248 kb on - strand at 713.263 kb on + strand at 713.263 kb on + strand at 713.290 kb on + strand at 713.298 kb on + strand at 713.298 kb on + strand at 713.298 kb on + strand at 713.340 kb on + strand at 713.340 kb on + strand at 713.343 kb on - strand at 713.399 kb on - strand at 713.399 kb on - strand at 713.432 kb on + strand at 713.487 kb on + strand, within PGA1_c06940 at 713.487 kb on + strand, within PGA1_c06940 at 713.503 kb on - strand, within PGA1_c06940 at 713.573 kb on - strand, within PGA1_c06940 at 713.589 kb on + strand, within PGA1_c06940 at 713.592 kb on - strand, within PGA1_c06940 at 713.595 kb on + strand, within PGA1_c06940 at 713.597 kb on - strand, within PGA1_c06940 at 713.642 kb on + strand, within PGA1_c06940 at 713.650 kb on - strand, within PGA1_c06940 at 713.650 kb on - strand, within PGA1_c06940 at 713.650 kb on - strand, within PGA1_c06940 at 713.696 kb on - strand, within PGA1_c06940 at 713.730 kb on + strand, within PGA1_c06940 at 713.731 kb on - strand, within PGA1_c06940 at 713.824 kb on - strand, within PGA1_c06940 at 713.824 kb on - strand, within PGA1_c06940 at 713.861 kb on + strand, within PGA1_c06940 at 713.927 kb on + strand, within PGA1_c06940 at 713.951 kb on + strand, within PGA1_c06940 at 713.951 kb on + strand, within PGA1_c06940 at 713.959 kb on - strand, within PGA1_c06940 at 713.959 kb on - strand, within PGA1_c06940 at 714.018 kb on + strand, within PGA1_c06940 at 714.018 kb on + strand, within PGA1_c06940 at 714.023 kb on + strand, within PGA1_c06940 at 714.026 kb on - strand, within PGA1_c06940 at 714.026 kb on - strand, within PGA1_c06940 at 714.056 kb on + strand, within PGA1_c06940 at 714.056 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.120 kb on + strand, within PGA1_c06940 at 714.123 kb on - strand, within PGA1_c06940 at 714.125 kb on + strand, within PGA1_c06940 at 714.128 kb on - strand, within PGA1_c06940 at 714.130 kb on + strand, within PGA1_c06940 at 714.130 kb on + strand, within PGA1_c06940 at 714.135 kb on + strand, within PGA1_c06940 at 714.138 kb on - strand, within PGA1_c06940 at 714.154 kb on - strand, within PGA1_c06940 at 714.192 kb on + strand, within PGA1_c06940 at 714.194 kb on - strand, within PGA1_c06940 at 714.260 kb on + strand, within PGA1_c06940 at 714.260 kb on + strand, within PGA1_c06940 at 714.263 kb on - strand, within PGA1_c06940 at 714.524 kb on + strand, within PGA1_c06940 at 714.556 kb on + strand, within PGA1_c06940 at 714.556 kb on + strand, within PGA1_c06940 at 714.635 kb on + strand, within PGA1_c06940 at 714.692 kb on - strand, within PGA1_c06940 at 714.732 kb on + strand, within PGA1_c06940 at 714.733 kb on + strand, within PGA1_c06940 at 714.733 kb on + strand, within PGA1_c06940 at 714.740 kb on + strand, within PGA1_c06940 at 714.778 kb on + strand, within PGA1_c06940 at 714.854 kb on + strand, within PGA1_c06940 at 714.912 kb on + strand, within PGA1_c06940 at 714.917 kb on + strand, within PGA1_c06940 at 714.925 kb on - strand, within PGA1_c06940 at 714.976 kb on - strand, within PGA1_c06940 at 714.976 kb on - strand, within PGA1_c06940 at 715.017 kb on + strand, within PGA1_c06940 at 715.025 kb on - strand, within PGA1_c06940 at 715.153 kb on - strand, within PGA1_c06940 at 715.220 kb on + strand, within PGA1_c06940 at 715.249 kb on - strand, within PGA1_c06940 at 715.272 kb on + strand, within PGA1_c06940 at 715.280 kb on - strand, within PGA1_c06940 at 715.289 kb on + strand, within PGA1_c06940 at 715.292 kb on - strand, within PGA1_c06940 at 715.292 kb on - strand, within PGA1_c06940 at 715.292 kb on - strand, within PGA1_c06940 at 715.297 kb on - strand, within PGA1_c06940 at 715.307 kb on + strand, within PGA1_c06940 at 715.314 kb on - strand, within PGA1_c06940 at 715.315 kb on - strand, within PGA1_c06940 at 715.324 kb on + strand at 715.422 kb on - strand at 715.445 kb on + strand at 715.514 kb on + strand at 715.596 kb on + strand at 715.596 kb on + strand at 715.596 kb on + strand at 715.596 kb on + strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.673 kb on - strand at 715.696 kb on - strand at 715.778 kb on + strand at 715.840 kb on - strand, within PGA1_c06950 at 715.840 kb on - strand, within PGA1_c06950 at 715.862 kb on + strand, within PGA1_c06950 at 715.862 kb on + strand, within PGA1_c06950 at 715.862 kb on + strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.870 kb on - strand, within PGA1_c06950 at 715.888 kb on - strand, within PGA1_c06950 at 715.889 kb on + strand, within PGA1_c06950 at 716.001 kb on + strand, within PGA1_c06950 at 716.039 kb on + strand, within PGA1_c06950 at 716.048 kb on + strand, within PGA1_c06950 at 716.056 kb on - strand, within PGA1_c06950 at 716.071 kb on + strand, within PGA1_c06950 at 716.086 kb on - strand, within PGA1_c06950 at 716.093 kb on - strand, within PGA1_c06950 at 716.104 kb on - strand, within PGA1_c06950 at 716.168 kb on - strand at 716.173 kb on - strand at 716.178 kb on - strand at 716.185 kb on + strand at 716.187 kb on + strand at 716.193 kb on - strand at 716.205 kb on + strand at 716.205 kb on + strand at 716.213 kb on - strand at 716.242 kb on + strand at 716.366 kb on + strand, within PGA1_c06960 at 716.388 kb on - strand, within PGA1_c06960 at 716.390 kb on + strand, within PGA1_c06960 at 716.441 kb on + strand, within PGA1_c06960 at 716.449 kb on - strand, within PGA1_c06960 at 716.449 kb on - strand, within PGA1_c06960 at 716.449 kb on - strand, within PGA1_c06960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 712,300 - PGA1_c06920 0.87 -0.7 712,322 - -1.3 712,327 + -1.6 712,335 - -0.3 712,342 - +0.5 712,353 + +0.3 712,356 + +0.8 712,361 - -1.4 712,467 + PGA1_c06930 0.27 -1.4 712,475 - PGA1_c06930 0.29 -0.0 712,479 + PGA1_c06930 0.30 -0.5 712,479 + PGA1_c06930 0.30 -0.8 712,479 + PGA1_c06930 0.30 +0.3 712,501 + PGA1_c06930 0.35 +1.0 712,501 + PGA1_c06930 0.35 +0.5 712,549 + PGA1_c06930 0.47 -0.5 712,549 + PGA1_c06930 0.47 -1.9 712,556 + PGA1_c06930 0.49 -0.5 712,639 + PGA1_c06930 0.70 +0.2 712,639 + PGA1_c06930 0.70 +0.6 712,639 + PGA1_c06930 0.70 +0.0 712,647 - PGA1_c06930 0.72 +1.1 712,647 - PGA1_c06930 0.72 +0.6 712,647 - PGA1_c06930 0.72 +0.4 712,647 - PGA1_c06930 0.72 -0.5 712,649 + PGA1_c06930 0.72 +0.2 712,649 + PGA1_c06930 0.72 +1.3 712,650 + PGA1_c06930 0.72 -0.5 712,657 - PGA1_c06930 0.74 -1.9 712,657 - PGA1_c06930 0.74 +0.6 712,700 + PGA1_c06930 0.85 +0.6 712,700 + PGA1_c06930 0.85 -0.2 712,700 + PGA1_c06930 0.85 +0.0 712,700 + PGA1_c06930 0.85 -0.3 712,706 + PGA1_c06930 0.86 +0.1 712,708 - PGA1_c06930 0.87 -0.4 712,714 - PGA1_c06930 0.88 -0.2 712,717 + PGA1_c06930 0.89 +0.2 712,717 + PGA1_c06930 0.89 +0.2 712,717 + PGA1_c06930 0.89 +0.1 712,722 + -0.8 712,725 - +0.5 712,730 - -0.3 712,751 - +0.8 712,762 - +0.0 712,762 - -1.2 712,762 - +0.5 712,785 + +0.5 712,791 + -0.4 712,791 + -0.5 712,791 + +0.6 712,792 + -0.3 712,793 - -0.3 712,799 - -0.3 712,799 - +0.2 712,799 - +0.3 712,838 + +0.4 712,838 + -0.7 712,838 + +0.2 712,838 + -0.8 712,838 + +0.6 712,838 + -0.5 712,838 + -0.8 712,838 + -0.4 712,838 + -0.2 712,838 + +0.1 712,838 + +0.4 712,838 + -0.6 712,838 + +0.6 712,838 + -0.2 712,838 + +0.7 712,838 + -0.6 712,846 - +0.3 712,846 - +0.3 712,846 - -0.7 712,846 - -1.3 712,846 - -1.6 712,846 - -1.2 712,846 - -2.2 712,846 - +0.0 712,846 - -0.0 712,846 - +0.9 712,846 - +0.8 712,846 - -0.0 712,846 - -0.8 712,846 - +0.3 712,876 + +1.1 712,876 + +0.4 712,884 - -0.6 712,909 + +0.4 712,922 - +0.1 712,941 + -1.4 712,941 + -0.5 712,949 - -0.6 712,959 - +0.0 712,975 - -0.3 712,982 + +0.2 712,983 - -0.4 713,006 + +0.4 713,006 + -0.1 713,006 + +1.2 713,011 + +0.2 713,019 - -0.9 713,083 + +1.4 713,090 + +0.2 713,091 - -0.9 713,091 - +0.8 713,095 + +0.0 713,095 + +0.3 713,098 - +0.2 713,098 - +1.0 713,098 - -2.1 713,100 + +0.0 713,100 + -0.0 713,100 + -1.9 713,108 + -1.4 713,108 - +0.2 713,160 - +0.6 713,168 + -0.2 713,168 + +0.4 713,170 + +0.2 713,176 - -0.8 713,176 - +0.1 713,230 - +0.4 713,240 + -0.4 713,248 - +0.2 713,263 + +0.8 713,263 + +1.0 713,290 + +1.3 713,298 + +0.3 713,298 + +1.2 713,298 + +1.3 713,340 + +1.3 713,340 + +1.5 713,343 - +1.3 713,399 - +1.6 713,399 - +1.1 713,432 + +1.6 713,487 + PGA1_c06940 0.10 +0.6 713,487 + PGA1_c06940 0.10 +0.3 713,503 - PGA1_c06940 0.11 +1.9 713,573 - PGA1_c06940 0.14 -0.3 713,589 + PGA1_c06940 0.14 +2.3 713,592 - PGA1_c06940 0.15 +0.9 713,595 + PGA1_c06940 0.15 +0.3 713,597 - PGA1_c06940 0.15 +1.4 713,642 + PGA1_c06940 0.17 +1.9 713,650 - PGA1_c06940 0.17 -1.1 713,650 - PGA1_c06940 0.17 +1.1 713,650 - PGA1_c06940 0.17 +1.2 713,696 - PGA1_c06940 0.19 +1.5 713,730 + PGA1_c06940 0.21 +1.6 713,731 - PGA1_c06940 0.21 +1.1 713,824 - PGA1_c06940 0.25 +0.7 713,824 - PGA1_c06940 0.25 +1.2 713,861 + PGA1_c06940 0.26 -1.0 713,927 + PGA1_c06940 0.29 +1.6 713,951 + PGA1_c06940 0.30 +1.5 713,951 + PGA1_c06940 0.30 +1.2 713,959 - PGA1_c06940 0.31 +0.9 713,959 - PGA1_c06940 0.31 +0.8 714,018 + PGA1_c06940 0.33 +1.0 714,018 + PGA1_c06940 0.33 -0.1 714,023 + PGA1_c06940 0.33 +2.1 714,026 - PGA1_c06940 0.34 +1.1 714,026 - PGA1_c06940 0.34 +0.3 714,056 + PGA1_c06940 0.35 +1.7 714,056 + PGA1_c06940 0.35 +0.8 714,120 + PGA1_c06940 0.38 -0.3 714,120 + PGA1_c06940 0.38 +1.6 714,120 + PGA1_c06940 0.38 -2.4 714,120 + PGA1_c06940 0.38 +1.7 714,120 + PGA1_c06940 0.38 +1.3 714,120 + PGA1_c06940 0.38 +0.8 714,123 - PGA1_c06940 0.38 +2.2 714,125 + PGA1_c06940 0.38 -0.6 714,128 - PGA1_c06940 0.38 +1.7 714,130 + PGA1_c06940 0.38 +1.8 714,130 + PGA1_c06940 0.38 +1.5 714,135 + PGA1_c06940 0.38 +1.1 714,138 - PGA1_c06940 0.38 +1.3 714,154 - PGA1_c06940 0.39 +0.9 714,192 + PGA1_c06940 0.41 +1.1 714,194 - PGA1_c06940 0.41 +1.4 714,260 + PGA1_c06940 0.44 -0.9 714,260 + PGA1_c06940 0.44 +0.6 714,263 - PGA1_c06940 0.44 +0.0 714,524 + PGA1_c06940 0.55 +1.4 714,556 + PGA1_c06940 0.57 +2.0 714,556 + PGA1_c06940 0.57 +1.2 714,635 + PGA1_c06940 0.60 +1.5 714,692 - PGA1_c06940 0.62 +0.7 714,732 + PGA1_c06940 0.64 +0.9 714,733 + PGA1_c06940 0.64 +2.1 714,733 + PGA1_c06940 0.64 +1.4 714,740 + PGA1_c06940 0.65 +0.7 714,778 + PGA1_c06940 0.66 -0.7 714,854 + PGA1_c06940 0.70 +0.3 714,912 + PGA1_c06940 0.72 +0.4 714,917 + PGA1_c06940 0.72 +1.1 714,925 - PGA1_c06940 0.73 +1.9 714,976 - PGA1_c06940 0.75 +1.1 714,976 - PGA1_c06940 0.75 +0.6 715,017 + PGA1_c06940 0.77 +1.0 715,025 - PGA1_c06940 0.77 +1.3 715,153 - PGA1_c06940 0.83 +0.7 715,220 + PGA1_c06940 0.85 +0.9 715,249 - PGA1_c06940 0.87 +0.9 715,272 + PGA1_c06940 0.88 +1.9 715,280 - PGA1_c06940 0.88 +1.4 715,289 + PGA1_c06940 0.88 +1.3 715,292 - PGA1_c06940 0.89 +1.2 715,292 - PGA1_c06940 0.89 +0.8 715,292 - PGA1_c06940 0.89 +2.5 715,297 - PGA1_c06940 0.89 +0.7 715,307 + PGA1_c06940 0.89 +1.2 715,314 - PGA1_c06940 0.90 -0.7 715,315 - PGA1_c06940 0.90 +0.9 715,324 + +1.6 715,422 - +1.2 715,445 + +0.1 715,514 + +1.0 715,596 + +1.3 715,596 + +0.9 715,596 + -0.7 715,596 + +1.2 715,604 - +1.6 715,604 - +1.1 715,673 - -0.5 715,696 - -0.3 715,778 + +0.2 715,840 - PGA1_c06950 0.23 -0.4 715,840 - PGA1_c06950 0.23 +0.2 715,862 + PGA1_c06950 0.28 +0.9 715,862 + PGA1_c06950 0.28 -0.3 715,862 + PGA1_c06950 0.28 +0.1 715,870 - PGA1_c06950 0.30 -0.3 715,870 - PGA1_c06950 0.30 -0.5 715,870 - PGA1_c06950 0.30 -1.2 715,870 - PGA1_c06950 0.30 -2.0 715,888 - PGA1_c06950 0.34 -0.2 715,889 + PGA1_c06950 0.34 +1.1 716,001 + PGA1_c06950 0.60 +0.4 716,039 + PGA1_c06950 0.69 +0.1 716,048 + PGA1_c06950 0.71 -1.2 716,056 - PGA1_c06950 0.73 +0.1 716,071 + PGA1_c06950 0.77 +0.1 716,086 - PGA1_c06950 0.80 -0.5 716,093 - PGA1_c06950 0.82 -0.6 716,104 - PGA1_c06950 0.84 -0.6 716,168 - -0.5 716,173 - +0.0 716,178 - +0.6 716,185 + -1.9 716,187 + -0.4 716,193 - +0.0 716,205 + -0.5 716,205 + -0.4 716,213 - -0.7 716,242 + +0.6 716,366 + PGA1_c06960 0.30 -0.8 716,388 - PGA1_c06960 0.37 -0.8 716,390 + PGA1_c06960 0.37 -0.0 716,441 + PGA1_c06960 0.53 +0.7 716,449 - PGA1_c06960 0.56 -1.2 716,449 - PGA1_c06960 0.56 +0.4 716,449 - PGA1_c06960 0.56 +0.2
Or see this region's nucleotide sequence