Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00610

Experiment: m.b. Cephalothin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00590 and PGA1_c00600 are separated by 57 nucleotidesPGA1_c00600 and PGA1_c00610 are separated by 37 nucleotidesPGA1_c00610 and PGA1_c00620 overlap by 4 nucleotidesPGA1_c00620 and PGA1_c00630 are separated by 1 nucleotides PGA1_c00590: PGA1_c00590 - chorismate mutase, at 59,697 to 60,005 _c00590 PGA1_c00600: PGA1_c00600 - putative acetyltransferase, at 60,063 to 60,665 _c00600 PGA1_c00610: PGA1_c00610 - acetyltransferase, GNAT family, at 60,703 to 61,449 _c00610 PGA1_c00620: PGA1_c00620 - putative acetyltransferase, GNAT family, at 61,446 to 61,991 _c00620 PGA1_c00630: PGA1_c00630 - signal recognition particle protein Ffh, at 61,993 to 63,516 _c00630 Position (kb) 60 61 62Strain fitness (log2 ratio) -1 0 1 2at 60.055 kb on - strandat 60.359 kb on - strand, within PGA1_c00600at 60.481 kb on - strand, within PGA1_c00600at 60.481 kb on - strand, within PGA1_c00600at 61.330 kb on - strand, within PGA1_c00610at 61.339 kb on - strand, within PGA1_c00610

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
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60,055 - +0.9
60,359 - PGA1_c00600 0.49 +2.1
60,481 - PGA1_c00600 0.69 +1.5
60,481 - PGA1_c00600 0.69 +1.3
61,330 - PGA1_c00610 0.84 +0.5
61,339 - PGA1_c00610 0.85 +1.2

Or see this region's nucleotide sequence