Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_521 and HP15_522 are separated by 6 nucleotides HP15_522 and HP15_523 are separated by 95 nucleotides HP15_523 and HP15_524 are separated by 56 nucleotides
HP15_521: HP15_521 - fimbrial protein pilin, at 535,532 to 535,894
_521
HP15_522: HP15_522 - type IV pilus biogenesis protein-like protein, at 535,901 to 536,458
_522
HP15_523: HP15_523 - two component, sigma54 specific, transcriptional regulator, Fis family, at 536,554 to 537,942
_523
HP15_524: HP15_524 - signal transduction histidine kinase, nitrogen specific, NtrB, at 537,999 to 539,654
_524
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1 at 535.641 kb on - strand, within HP15_521 at 535.857 kb on - strand, within HP15_521 at 535.974 kb on - strand, within HP15_522 at 536.209 kb on - strand, within HP15_522 at 536.317 kb on - strand, within HP15_522 at 536.541 kb on + strand at 536.834 kb on - strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.851 kb on - strand, within HP15_523 at 536.919 kb on - strand, within HP15_523 at 536.919 kb on - strand, within HP15_523 at 537.031 kb on + strand, within HP15_523 at 537.116 kb on - strand, within HP15_523 at 537.143 kb on + strand, within HP15_523 at 537.149 kb on - strand, within HP15_523 at 537.238 kb on + strand, within HP15_523 at 537.480 kb on + strand, within HP15_523 at 537.501 kb on - strand, within HP15_523 at 537.534 kb on + strand, within HP15_523 at 537.542 kb on - strand, within HP15_523 at 537.574 kb on - strand, within HP15_523 at 537.574 kb on - strand, within HP15_523 at 537.624 kb on - strand, within HP15_523 at 537.703 kb on - strand, within HP15_523 at 537.703 kb on - strand, within HP15_523 at 537.719 kb on + strand, within HP15_523 at 537.719 kb on + strand, within HP15_523 at 537.745 kb on + strand, within HP15_523 at 537.748 kb on - strand, within HP15_523 at 537.753 kb on - strand, within HP15_523 at 537.758 kb on - strand, within HP15_523 at 537.850 kb on - strand at 537.914 kb on + strand at 537.919 kb on + strand at 537.927 kb on - strand at 538.008 kb on - strand at 538.097 kb on + strand at 538.213 kb on + strand, within HP15_524 at 538.218 kb on + strand, within HP15_524 at 538.270 kb on + strand, within HP15_524 at 538.285 kb on + strand, within HP15_524 at 538.285 kb on + strand, within HP15_524 at 538.293 kb on - strand, within HP15_524 at 538.323 kb on - strand, within HP15_524 at 538.461 kb on + strand, within HP15_524 at 538.504 kb on - strand, within HP15_524 at 538.607 kb on - strand, within HP15_524 at 538.607 kb on - strand, within HP15_524 at 538.690 kb on + strand, within HP15_524 at 538.766 kb on + strand, within HP15_524
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 535,641 - HP15_521 0.30 +0.9 535,857 - HP15_521 0.90 -0.3 535,974 - HP15_522 0.13 -0.2 536,209 - HP15_522 0.55 +1.0 536,317 - HP15_522 0.75 +0.7 536,541 + +1.1 536,834 - HP15_523 0.20 -0.6 536,841 + HP15_523 0.21 -1.0 536,841 + HP15_523 0.21 +0.9 536,841 + HP15_523 0.21 -0.7 536,849 - HP15_523 0.21 -0.1 536,849 - HP15_523 0.21 -0.9 536,849 - HP15_523 0.21 -1.1 536,851 - HP15_523 0.21 -0.8 536,919 - HP15_523 0.26 -1.6 536,919 - HP15_523 0.26 -0.5 537,031 + HP15_523 0.34 -0.9 537,116 - HP15_523 0.40 -0.7 537,143 + HP15_523 0.42 -0.6 537,149 - HP15_523 0.43 -0.5 537,238 + HP15_523 0.49 -0.2 537,480 + HP15_523 0.67 -1.1 537,501 - HP15_523 0.68 -0.5 537,534 + HP15_523 0.71 -0.0 537,542 - HP15_523 0.71 -2.1 537,574 - HP15_523 0.73 -0.6 537,574 - HP15_523 0.73 -0.6 537,624 - HP15_523 0.77 -1.1 537,703 - HP15_523 0.83 -0.9 537,703 - HP15_523 0.83 -0.8 537,719 + HP15_523 0.84 -0.1 537,719 + HP15_523 0.84 -0.4 537,745 + HP15_523 0.86 -1.2 537,748 - HP15_523 0.86 +0.9 537,753 - HP15_523 0.86 -1.3 537,758 - HP15_523 0.87 -0.4 537,850 - -0.2 537,914 + -0.4 537,919 + +0.9 537,927 - -1.5 538,008 - +0.3 538,097 + -0.7 538,213 + HP15_524 0.13 -0.7 538,218 + HP15_524 0.13 -0.7 538,270 + HP15_524 0.16 -0.7 538,285 + HP15_524 0.17 -1.4 538,285 + HP15_524 0.17 -0.7 538,293 - HP15_524 0.18 -1.0 538,323 - HP15_524 0.20 -0.9 538,461 + HP15_524 0.28 -1.2 538,504 - HP15_524 0.30 -0.6 538,607 - HP15_524 0.37 -0.7 538,607 - HP15_524 0.37 -0.5 538,690 + HP15_524 0.42 -0.4 538,766 + HP15_524 0.46 -0.8
Or see this region's nucleotide sequence