Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g45

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g43 and HP15_p42g44 are separated by 9 nucleotidesHP15_p42g44 and HP15_p42g45 are separated by 18 nucleotidesHP15_p42g45 and HP15_p42g46 are separated by 3 nucleotidesHP15_p42g46 and HP15_p42g47 are separated by 2 nucleotides HP15_p42g43: HP15_p42g43 - TrbK entry exclusion protein-like protein, at 33,397 to 33,624 _p42g43 HP15_p42g44: HP15_p42g44 - mating pair formation protein TrbJ, at 33,634 to 34,395 _p42g44 HP15_p42g45: HP15_p42g45 - conjugation TrbI family protein, at 34,414 to 35,841 _p42g45 HP15_p42g46: HP15_p42g46 - conjugal transfer, TrbH, at 35,845 to 36,360 _p42g46 HP15_p42g47: HP15_p42g47 - conjugal transfer protein TrbG/VirB9/CagX, at 36,363 to 37,268 _p42g47 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3at 33.434 kb on + strand, within HP15_p42g43at 33.493 kb on - strand, within HP15_p42g43at 33.574 kb on - strand, within HP15_p42g43at 33.579 kb on + strand, within HP15_p42g43at 33.641 kb on - strandat 33.645 kb on + strandat 33.653 kb on - strandat 33.654 kb on - strandat 33.684 kb on - strandat 33.689 kb on - strandat 33.697 kb on + strandat 33.790 kb on + strand, within HP15_p42g44at 34.009 kb on - strand, within HP15_p42g44at 34.021 kb on + strand, within HP15_p42g44at 34.045 kb on - strand, within HP15_p42g44at 34.066 kb on - strand, within HP15_p42g44at 34.068 kb on + strand, within HP15_p42g44at 34.120 kb on - strand, within HP15_p42g44at 34.172 kb on + strand, within HP15_p42g44at 34.194 kb on - strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.332 kb on + strandat 34.335 kb on - strandat 34.357 kb on + strandat 34.362 kb on + strandat 34.399 kb on + strandat 34.419 kb on + strandat 34.511 kb on + strandat 34.521 kb on - strandat 34.596 kb on + strand, within HP15_p42g45at 34.635 kb on + strand, within HP15_p42g45at 34.643 kb on - strand, within HP15_p42g45at 34.658 kb on + strand, within HP15_p42g45at 34.696 kb on - strand, within HP15_p42g45at 34.697 kb on - strand, within HP15_p42g45at 34.802 kb on - strand, within HP15_p42g45at 34.911 kb on + strand, within HP15_p42g45at 34.955 kb on + strand, within HP15_p42g45at 34.998 kb on + strand, within HP15_p42g45at 34.998 kb on + strand, within HP15_p42g45at 35.008 kb on + strand, within HP15_p42g45at 35.091 kb on + strand, within HP15_p42g45at 35.218 kb on + strand, within HP15_p42g45at 35.306 kb on - strand, within HP15_p42g45at 35.306 kb on - strand, within HP15_p42g45at 35.328 kb on + strand, within HP15_p42g45at 35.336 kb on - strand, within HP15_p42g45at 35.421 kb on + strand, within HP15_p42g45at 35.486 kb on + strand, within HP15_p42g45at 35.662 kb on + strand, within HP15_p42g45at 35.682 kb on - strand, within HP15_p42g45at 35.725 kb on + strandat 35.725 kb on + strandat 35.732 kb on - strandat 35.732 kb on - strandat 35.818 kb on - strandat 35.842 kb on + strandat 35.944 kb on + strand, within HP15_p42g46at 35.946 kb on + strand, within HP15_p42g46at 35.946 kb on + strand, within HP15_p42g46at 35.948 kb on + strand, within HP15_p42g46at 35.991 kb on + strand, within HP15_p42g46at 36.011 kb on + strand, within HP15_p42g46at 36.019 kb on - strand, within HP15_p42g46at 36.019 kb on - strand, within HP15_p42g46at 36.029 kb on - strand, within HP15_p42g46at 36.040 kb on + strand, within HP15_p42g46at 36.045 kb on + strand, within HP15_p42g46at 36.050 kb on + strand, within HP15_p42g46at 36.055 kb on + strand, within HP15_p42g46at 36.058 kb on - strand, within HP15_p42g46at 36.058 kb on - strand, within HP15_p42g46at 36.109 kb on + strand, within HP15_p42g46at 36.109 kb on + strand, within HP15_p42g46at 36.115 kb on - strand, within HP15_p42g46at 36.117 kb on - strand, within HP15_p42g46at 36.145 kb on + strand, within HP15_p42g46at 36.145 kb on + strand, within HP15_p42g46at 36.153 kb on - strand, within HP15_p42g46at 36.153 kb on - strand, within HP15_p42g46at 36.153 kb on - strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.170 kb on + strand, within HP15_p42g46at 36.258 kb on + strand, within HP15_p42g46at 36.292 kb on + strand, within HP15_p42g46at 36.317 kb on + strandat 36.325 kb on - strandat 36.359 kb on - strandat 36.360 kb on + strandat 36.432 kb on + strandat 36.490 kb on + strand, within HP15_p42g47at 36.511 kb on + strand, within HP15_p42g47at 36.553 kb on - strand, within HP15_p42g47at 36.570 kb on - strand, within HP15_p42g47at 36.614 kb on + strand, within HP15_p42g47at 36.702 kb on + strand, within HP15_p42g47at 36.710 kb on - strand, within HP15_p42g47at 36.759 kb on + strand, within HP15_p42g47at 36.824 kb on + strand, within HP15_p42g47

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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33,434 + HP15_p42g43 0.16 +0.3
33,493 - HP15_p42g43 0.42 -0.7
33,574 - HP15_p42g43 0.78 -1.6
33,579 + HP15_p42g43 0.80 +0.6
33,641 - -1.4
33,645 + +0.1
33,653 - -2.4
33,654 - -1.7
33,684 - -1.7
33,689 - -1.2
33,697 + -0.1
33,790 + HP15_p42g44 0.20 -0.4
34,009 - HP15_p42g44 0.49 -1.3
34,021 + HP15_p42g44 0.51 -0.1
34,045 - HP15_p42g44 0.54 -1.0
34,066 - HP15_p42g44 0.57 -0.6
34,068 + HP15_p42g44 0.57 -0.8
34,120 - HP15_p42g44 0.64 -0.8
34,172 + HP15_p42g44 0.71 +0.5
34,194 - HP15_p42g44 0.73 -0.4
34,290 + HP15_p42g44 0.86 +0.4
34,290 + HP15_p42g44 0.86 +0.4
34,290 + HP15_p42g44 0.86 +0.5
34,332 + +0.8
34,335 - -0.7
34,357 + +0.4
34,362 + -0.1
34,399 + -0.4
34,419 + -0.3
34,511 + -0.0
34,521 - -1.7
34,596 + HP15_p42g45 0.13 -0.2
34,635 + HP15_p42g45 0.15 +0.4
34,643 - HP15_p42g45 0.16 -2.5
34,658 + HP15_p42g45 0.17 +0.2
34,696 - HP15_p42g45 0.20 -0.8
34,697 - HP15_p42g45 0.20 -1.0
34,802 - HP15_p42g45 0.27 -2.0
34,911 + HP15_p42g45 0.35 -0.2
34,955 + HP15_p42g45 0.38 -0.0
34,998 + HP15_p42g45 0.41 -0.2
34,998 + HP15_p42g45 0.41 -1.1
35,008 + HP15_p42g45 0.42 +1.7
35,091 + HP15_p42g45 0.47 +0.1
35,218 + HP15_p42g45 0.56 -1.6
35,306 - HP15_p42g45 0.62 -0.2
35,306 - HP15_p42g45 0.62 -0.7
35,328 + HP15_p42g45 0.64 +0.3
35,336 - HP15_p42g45 0.65 -0.3
35,421 + HP15_p42g45 0.71 +0.3
35,486 + HP15_p42g45 0.75 +0.0
35,662 + HP15_p42g45 0.87 +0.1
35,682 - HP15_p42g45 0.89 -1.5
35,725 + +0.3
35,725 + +1.0
35,732 - -1.5
35,732 - -1.8
35,818 - -1.4
35,842 + +0.9
35,944 + HP15_p42g46 0.19 -0.0
35,946 + HP15_p42g46 0.20 +0.5
35,946 + HP15_p42g46 0.20 +0.1
35,948 + HP15_p42g46 0.20 -0.4
35,991 + HP15_p42g46 0.28 +0.8
36,011 + HP15_p42g46 0.32 +0.6
36,019 - HP15_p42g46 0.34 -0.4
36,019 - HP15_p42g46 0.34 -2.1
36,029 - HP15_p42g46 0.36 -2.7
36,040 + HP15_p42g46 0.38 +0.1
36,045 + HP15_p42g46 0.39 -0.2
36,050 + HP15_p42g46 0.40 +0.5
36,055 + HP15_p42g46 0.41 +0.2
36,058 - HP15_p42g46 0.41 +1.2
36,058 - HP15_p42g46 0.41 -2.1
36,109 + HP15_p42g46 0.51 +0.2
36,109 + HP15_p42g46 0.51 -0.1
36,115 - HP15_p42g46 0.52 -1.6
36,117 - HP15_p42g46 0.53 -2.2
36,145 + HP15_p42g46 0.58 -0.5
36,145 + HP15_p42g46 0.58 -0.0
36,153 - HP15_p42g46 0.60 -1.1
36,153 - HP15_p42g46 0.60 -0.1
36,153 - HP15_p42g46 0.60 -1.6
36,170 + HP15_p42g46 0.63 +0.1
36,170 + HP15_p42g46 0.63 +0.3
36,170 + HP15_p42g46 0.63 -0.1
36,170 + HP15_p42g46 0.63 +0.3
36,170 + HP15_p42g46 0.63 +0.1
36,258 + HP15_p42g46 0.80 -0.2
36,292 + HP15_p42g46 0.87 +0.5
36,317 + +0.2
36,325 - -0.6
36,359 - -0.8
36,360 + -0.1
36,432 + -1.5
36,490 + HP15_p42g47 0.14 +0.9
36,511 + HP15_p42g47 0.16 +0.1
36,553 - HP15_p42g47 0.21 -2.0
36,570 - HP15_p42g47 0.23 -2.4
36,614 + HP15_p42g47 0.28 -1.3
36,702 + HP15_p42g47 0.37 -0.5
36,710 - HP15_p42g47 0.38 -1.9
36,759 + HP15_p42g47 0.44 -0.2
36,824 + HP15_p42g47 0.51 +3.2

Or see this region's nucleotide sequence