Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04280 and PGA1_c04290 are separated by 9 nucleotides PGA1_c04290 and PGA1_c04300 are separated by 23 nucleotides PGA1_c04300 and PGA1_c04310 overlap by 19 nucleotides PGA1_c04310 and PGA1_c04320 are separated by 52 nucleotides
PGA1_c04280: PGA1_c04280 - phosphonates transport ATP-binding protein PhnK, at 414,699 to 415,469
_c04280
PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162
_c04290
PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731
_c04300
PGA1_c04310: PGA1_c04310 - Protein of unknown function (DUF1045)., at 416,713 to 417,396
_c04310
PGA1_c04320: PGA1_c04320 - protein PhnM, at 417,449 to 418,591
_c04320
Position (kb) 416
417 Strain fitness (log2 ratio) -2
-1
0
1 at 415.218 kb on + strand, within PGA1_c04280 at 415.242 kb on - strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.299 kb on - strand, within PGA1_c04280 at 415.387 kb on + strand, within PGA1_c04280 at 415.400 kb on - strand at 415.435 kb on - strand at 415.463 kb on + strand at 415.507 kb on + strand at 415.507 kb on + strand at 415.520 kb on - strand at 415.592 kb on + strand, within PGA1_c04290 at 415.600 kb on - strand, within PGA1_c04290 at 415.679 kb on - strand, within PGA1_c04290 at 415.692 kb on - strand, within PGA1_c04290 at 415.699 kb on + strand, within PGA1_c04290 at 415.767 kb on + strand, within PGA1_c04290 at 415.778 kb on - strand, within PGA1_c04290 at 415.816 kb on - strand, within PGA1_c04290 at 415.852 kb on + strand, within PGA1_c04290 at 415.860 kb on - strand, within PGA1_c04290 at 415.869 kb on + strand, within PGA1_c04290 at 416.002 kb on + strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.036 kb on - strand, within PGA1_c04290 at 416.062 kb on + strand, within PGA1_c04290 at 416.108 kb on + strand at 416.108 kb on + strand at 416.108 kb on + strand at 416.186 kb on - strand at 416.238 kb on + strand at 416.242 kb on + strand, within PGA1_c04300 at 416.248 kb on - strand, within PGA1_c04300 at 416.304 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.347 kb on + strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.355 kb on - strand, within PGA1_c04300 at 416.364 kb on + strand, within PGA1_c04300 at 416.372 kb on - strand, within PGA1_c04300 at 416.382 kb on - strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.384 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.390 kb on + strand, within PGA1_c04300 at 416.392 kb on - strand, within PGA1_c04300 at 416.398 kb on - strand, within PGA1_c04300 at 416.442 kb on + strand, within PGA1_c04300 at 416.445 kb on - strand, within PGA1_c04300 at 416.565 kb on + strand, within PGA1_c04300 at 416.567 kb on + strand, within PGA1_c04300 at 416.573 kb on - strand, within PGA1_c04300 at 416.607 kb on + strand, within PGA1_c04300 at 416.696 kb on + strand at 417.046 kb on + strand, within PGA1_c04310 at 417.054 kb on - strand, within PGA1_c04310 at 417.065 kb on - strand, within PGA1_c04310 at 417.225 kb on + strand, within PGA1_c04310 at 417.390 kb on - strand at 417.402 kb on + strand at 417.405 kb on + strand at 417.434 kb on - strand at 417.458 kb on + strand at 417.458 kb on + strand at 417.458 kb on + strand at 417.480 kb on + strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.552 kb on - strand at 417.576 kb on + strand, within PGA1_c04320 at 417.576 kb on + strand, within PGA1_c04320 at 417.681 kb on - strand, within PGA1_c04320
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 415,218 + PGA1_c04280 0.67 +0.1 415,242 - PGA1_c04280 0.70 +0.9 415,291 + PGA1_c04280 0.77 +0.3 415,291 + PGA1_c04280 0.77 -0.4 415,299 - PGA1_c04280 0.78 -1.2 415,387 + PGA1_c04280 0.89 +0.3 415,400 - +0.4 415,435 - -1.0 415,463 + -0.2 415,507 + +0.6 415,507 + -0.3 415,520 - -0.2 415,592 + PGA1_c04290 0.17 +0.0 415,600 - PGA1_c04290 0.18 +0.3 415,679 - PGA1_c04290 0.29 +1.0 415,692 - PGA1_c04290 0.31 -1.1 415,699 + PGA1_c04290 0.32 +0.4 415,767 + PGA1_c04290 0.42 -0.7 415,778 - PGA1_c04290 0.44 +0.4 415,816 - PGA1_c04290 0.49 -1.1 415,852 + PGA1_c04290 0.55 +1.2 415,860 - PGA1_c04290 0.56 +0.9 415,869 + PGA1_c04290 0.57 +0.7 416,002 + PGA1_c04290 0.76 +0.4 416,036 - PGA1_c04290 0.81 -1.4 416,036 - PGA1_c04290 0.81 -0.8 416,062 + PGA1_c04290 0.85 +1.2 416,108 + -1.1 416,108 + +0.2 416,108 + +0.3 416,186 - +0.0 416,238 + +0.8 416,242 + PGA1_c04300 0.10 +0.2 416,248 - PGA1_c04300 0.11 +0.4 416,304 + PGA1_c04300 0.22 -0.5 416,347 + PGA1_c04300 0.29 -0.4 416,347 + PGA1_c04300 0.29 +0.6 416,355 - PGA1_c04300 0.31 -0.3 416,355 - PGA1_c04300 0.31 -0.6 416,364 + PGA1_c04300 0.33 +0.2 416,372 - PGA1_c04300 0.34 -0.0 416,382 - PGA1_c04300 0.36 +0.7 416,384 + PGA1_c04300 0.36 +0.3 416,384 + PGA1_c04300 0.36 +0.2 416,384 + PGA1_c04300 0.36 -0.0 416,384 + PGA1_c04300 0.36 +0.6 416,384 + PGA1_c04300 0.36 -0.5 416,390 + PGA1_c04300 0.37 -0.2 416,390 + PGA1_c04300 0.37 -0.7 416,390 + PGA1_c04300 0.37 +0.8 416,390 + PGA1_c04300 0.37 -1.1 416,390 + PGA1_c04300 0.37 +0.9 416,392 - PGA1_c04300 0.38 -0.5 416,398 - PGA1_c04300 0.39 +0.7 416,442 + PGA1_c04300 0.47 -1.1 416,445 - PGA1_c04300 0.47 -1.6 416,565 + PGA1_c04300 0.69 -0.1 416,567 + PGA1_c04300 0.70 -0.1 416,573 - PGA1_c04300 0.71 +0.4 416,607 + PGA1_c04300 0.77 -1.6 416,696 + -0.0 417,046 + PGA1_c04310 0.49 +0.9 417,054 - PGA1_c04310 0.50 +0.9 417,065 - PGA1_c04310 0.51 +0.8 417,225 + PGA1_c04310 0.75 +0.3 417,390 - -0.4 417,402 + -0.1 417,405 + -0.4 417,434 - -0.2 417,458 + +0.2 417,458 + +0.1 417,458 + -0.5 417,480 + +0.7 417,488 - -0.1 417,488 - -0.2 417,488 - -0.4 417,488 - +0.2 417,488 - -0.1 417,488 - -0.1 417,488 - +0.2 417,552 - +0.2 417,576 + PGA1_c04320 0.11 -0.1 417,576 + PGA1_c04320 0.11 -1.9 417,681 - PGA1_c04320 0.20 +0.0
Or see this region's nucleotide sequence