Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4076 and HP15_4077 are separated by 45 nucleotides HP15_4077 and HP15_4078 are separated by 32 nucleotides HP15_4078 and HP15_4079 overlap by 4 nucleotides
HP15_4076: HP15_4076 - TRAP dicarboxylate transporter, DctP subunit, at 4,309,735 to 4,310,859
_4076
HP15_4077: HP15_4077 - conserved hypothetical protein, at 4,310,905 to 4,311,531
_4077
HP15_4078: HP15_4078 - glutathione peroxidase, at 4,311,564 to 4,312,136
_4078
HP15_4079: HP15_4079 - flavin dependent oxidoreductase, at 4,312,133 to 4,313,116
_4079
Position (kb) 4310
4311
4312 Strain fitness (log2 ratio) -1
0
1 at 4309.952 kb on - strand, within HP15_4076 at 4309.978 kb on + strand, within HP15_4076 at 4310.157 kb on - strand, within HP15_4076 at 4310.159 kb on + strand, within HP15_4076 at 4310.162 kb on + strand, within HP15_4076 at 4310.170 kb on - strand, within HP15_4076 at 4310.170 kb on - strand, within HP15_4076 at 4310.179 kb on + strand, within HP15_4076 at 4310.182 kb on - strand, within HP15_4076 at 4310.188 kb on + strand, within HP15_4076 at 4310.244 kb on - strand, within HP15_4076 at 4310.351 kb on + strand, within HP15_4076 at 4310.366 kb on - strand, within HP15_4076 at 4310.439 kb on + strand, within HP15_4076 at 4310.475 kb on + strand, within HP15_4076 at 4310.501 kb on - strand, within HP15_4076 at 4310.506 kb on + strand, within HP15_4076 at 4310.588 kb on + strand, within HP15_4076 at 4310.591 kb on - strand, within HP15_4076 at 4310.698 kb on + strand, within HP15_4076 at 4310.710 kb on + strand, within HP15_4076 at 4310.721 kb on + strand, within HP15_4076 at 4310.876 kb on - strand at 4311.056 kb on + strand, within HP15_4077 at 4311.096 kb on + strand, within HP15_4077 at 4311.101 kb on + strand, within HP15_4077 at 4311.118 kb on + strand, within HP15_4077 at 4311.308 kb on + strand, within HP15_4077 at 4311.445 kb on + strand, within HP15_4077 at 4311.499 kb on + strand at 4311.504 kb on + strand at 4311.504 kb on + strand at 4311.507 kb on - strand at 4311.519 kb on - strand at 4311.641 kb on + strand, within HP15_4078 at 4311.715 kb on + strand, within HP15_4078 at 4311.723 kb on - strand, within HP15_4078 at 4311.723 kb on - strand, within HP15_4078 at 4311.758 kb on + strand, within HP15_4078 at 4311.792 kb on - strand, within HP15_4078 at 4311.803 kb on + strand, within HP15_4078 at 4312.062 kb on + strand, within HP15_4078 at 4312.082 kb on - strand at 4312.272 kb on - strand, within HP15_4079 at 4312.305 kb on - strand, within HP15_4079 at 4312.370 kb on + strand, within HP15_4079 at 4312.493 kb on + strand, within HP15_4079 at 4312.506 kb on - strand, within HP15_4079
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 4,309,952 - HP15_4076 0.19 +0.7 4,309,978 + HP15_4076 0.22 +0.5 4,310,157 - HP15_4076 0.38 -0.7 4,310,159 + HP15_4076 0.38 -0.2 4,310,162 + HP15_4076 0.38 -0.1 4,310,170 - HP15_4076 0.39 +0.1 4,310,170 - HP15_4076 0.39 -0.1 4,310,179 + HP15_4076 0.39 -0.1 4,310,182 - HP15_4076 0.40 +1.4 4,310,188 + HP15_4076 0.40 -0.0 4,310,244 - HP15_4076 0.45 +0.5 4,310,351 + HP15_4076 0.55 -0.2 4,310,366 - HP15_4076 0.56 +0.1 4,310,439 + HP15_4076 0.63 +0.9 4,310,475 + HP15_4076 0.66 -0.0 4,310,501 - HP15_4076 0.68 -0.9 4,310,506 + HP15_4076 0.69 -0.3 4,310,588 + HP15_4076 0.76 +0.3 4,310,591 - HP15_4076 0.76 +0.5 4,310,698 + HP15_4076 0.86 +0.0 4,310,710 + HP15_4076 0.87 +0.3 4,310,721 + HP15_4076 0.88 +0.1 4,310,876 - -0.1 4,311,056 + HP15_4077 0.24 +1.0 4,311,096 + HP15_4077 0.30 -0.1 4,311,101 + HP15_4077 0.31 +1.7 4,311,118 + HP15_4077 0.34 +0.5 4,311,308 + HP15_4077 0.64 +0.7 4,311,445 + HP15_4077 0.86 +0.6 4,311,499 + +0.5 4,311,504 + -0.1 4,311,504 + +0.1 4,311,507 - -1.1 4,311,519 - +0.2 4,311,641 + HP15_4078 0.13 -1.5 4,311,715 + HP15_4078 0.26 -0.5 4,311,723 - HP15_4078 0.28 +0.1 4,311,723 - HP15_4078 0.28 -0.1 4,311,758 + HP15_4078 0.34 +0.7 4,311,792 - HP15_4078 0.40 -0.5 4,311,803 + HP15_4078 0.42 -0.2 4,312,062 + HP15_4078 0.87 -0.7 4,312,082 - -0.0 4,312,272 - HP15_4079 0.14 -0.1 4,312,305 - HP15_4079 0.17 -0.2 4,312,370 + HP15_4079 0.24 +0.2 4,312,493 + HP15_4079 0.37 +0.3 4,312,506 - HP15_4079 0.38 -0.1
Or see this region's nucleotide sequence