Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4003 and HP15_4004 are separated by 10 nucleotides HP15_4004 and HP15_4005 are separated by 7 nucleotides HP15_4005 and HP15_4006 overlap by 4 nucleotides
HP15_4003: HP15_4003 - transporter, AcrB/AcrD/AcrF family protein, at 4,236,013 to 4,239,114
_4003
HP15_4004: HP15_4004 - lipoprotein-releasing system ATP-binding protein lolD, at 4,239,125 to 4,239,808
_4004
HP15_4005: HP15_4005 - membrane protein containing DUF214, permase predicted, at 4,239,816 to 4,242,086
_4005
HP15_4006: HP15_4006 - conserved hypothetical protein, at 4,242,083 to 4,243,162
_4006
Position (kb)
4239
4240
4241
4242
4243 Strain fitness (log2 ratio)
-1
0
1 at 4238.936 kb on - strand at 4239.012 kb on - strand at 4239.117 kb on + strand at 4239.152 kb on + strand at 4239.363 kb on + strand, within HP15_4004 at 4239.392 kb on + strand, within HP15_4004 at 4239.514 kb on + strand, within HP15_4004 at 4239.657 kb on + strand, within HP15_4004 at 4239.657 kb on + strand, within HP15_4004 at 4239.657 kb on + strand, within HP15_4004 at 4239.657 kb on + strand, within HP15_4004 at 4239.665 kb on - strand, within HP15_4004 at 4239.665 kb on - strand, within HP15_4004 at 4239.728 kb on - strand, within HP15_4004 at 4239.782 kb on + strand at 4239.836 kb on + strand at 4239.839 kb on - strand at 4239.844 kb on - strand at 4239.933 kb on + strand at 4239.939 kb on + strand at 4239.941 kb on - strand at 4239.946 kb on - strand at 4239.957 kb on - strand at 4239.972 kb on - strand at 4240.002 kb on + strand at 4240.010 kb on - strand at 4240.077 kb on - strand, within HP15_4005 at 4240.077 kb on - strand, within HP15_4005 at 4240.107 kb on + strand, within HP15_4005 at 4240.116 kb on - strand, within HP15_4005 at 4240.165 kb on + strand, within HP15_4005 at 4240.215 kb on + strand, within HP15_4005 at 4240.337 kb on + strand, within HP15_4005 at 4240.419 kb on - strand, within HP15_4005 at 4240.426 kb on + strand, within HP15_4005 at 4240.447 kb on + strand, within HP15_4005 at 4240.455 kb on - strand, within HP15_4005 at 4240.473 kb on - strand, within HP15_4005 at 4240.575 kb on + strand, within HP15_4005 at 4240.580 kb on + strand, within HP15_4005 at 4240.583 kb on - strand, within HP15_4005 at 4240.625 kb on + strand, within HP15_4005 at 4240.638 kb on - strand, within HP15_4005 at 4240.643 kb on - strand, within HP15_4005 at 4240.834 kb on - strand, within HP15_4005 at 4240.942 kb on + strand, within HP15_4005 at 4240.982 kb on - strand, within HP15_4005 at 4240.997 kb on - strand, within HP15_4005 at 4241.053 kb on + strand, within HP15_4005 at 4241.104 kb on - strand, within HP15_4005 at 4241.138 kb on - strand, within HP15_4005 at 4241.302 kb on - strand, within HP15_4005 at 4241.341 kb on - strand, within HP15_4005 at 4241.587 kb on + strand, within HP15_4005 at 4241.595 kb on - strand, within HP15_4005 at 4241.689 kb on - strand, within HP15_4005 at 4241.692 kb on + strand, within HP15_4005 at 4241.692 kb on + strand, within HP15_4005 at 4241.700 kb on - strand, within HP15_4005 at 4241.867 kb on + strand at 4241.867 kb on + strand at 4241.867 kb on + strand at 4241.895 kb on - strand at 4241.986 kb on - strand at 4242.056 kb on + strand at 4242.064 kb on - strand at 4242.068 kb on + strand at 4242.129 kb on + strand at 4242.216 kb on - strand, within HP15_4006 at 4242.464 kb on - strand, within HP15_4006 at 4242.541 kb on + strand, within HP15_4006 at 4242.624 kb on - strand, within HP15_4006 at 4242.734 kb on - strand, within HP15_4006 at 4242.734 kb on - strand, within HP15_4006 at 4242.790 kb on - strand, within HP15_4006 at 4242.828 kb on + strand, within HP15_4006 at 4242.836 kb on - strand, within HP15_4006 at 4242.867 kb on - strand, within HP15_4006 at 4242.934 kb on - strand, within HP15_4006 at 4242.958 kb on - strand, within HP15_4006 at 4242.968 kb on - strand, within HP15_4006
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 4,238,936 - -0.1 4,239,012 - -1.3 4,239,117 + +0.5 4,239,152 + +0.5 4,239,363 + HP15_4004 0.35 +0.1 4,239,392 + HP15_4004 0.39 -0.2 4,239,514 + HP15_4004 0.57 -0.1 4,239,657 + HP15_4004 0.78 -0.3 4,239,657 + HP15_4004 0.78 +0.3 4,239,657 + HP15_4004 0.78 -0.3 4,239,657 + HP15_4004 0.78 +0.3 4,239,665 - HP15_4004 0.79 +0.1 4,239,665 - HP15_4004 0.79 -0.3 4,239,728 - HP15_4004 0.88 -0.1 4,239,782 + +0.0 4,239,836 + -0.1 4,239,839 - +0.7 4,239,844 - -0.9 4,239,933 + +0.1 4,239,939 + -0.1 4,239,941 - -0.4 4,239,946 - +0.2 4,239,957 - -0.3 4,239,972 - -0.6 4,240,002 + +0.1 4,240,010 - +0.1 4,240,077 - HP15_4005 0.11 -0.2 4,240,077 - HP15_4005 0.11 +0.1 4,240,107 + HP15_4005 0.13 -0.3 4,240,116 - HP15_4005 0.13 -0.1 4,240,165 + HP15_4005 0.15 +0.6 4,240,215 + HP15_4005 0.18 +0.6 4,240,337 + HP15_4005 0.23 -0.2 4,240,419 - HP15_4005 0.27 -0.5 4,240,426 + HP15_4005 0.27 +0.7 4,240,447 + HP15_4005 0.28 -0.1 4,240,455 - HP15_4005 0.28 +0.8 4,240,473 - HP15_4005 0.29 -0.7 4,240,575 + HP15_4005 0.33 +1.2 4,240,580 + HP15_4005 0.34 -0.2 4,240,583 - HP15_4005 0.34 +0.3 4,240,625 + HP15_4005 0.36 +1.3 4,240,638 - HP15_4005 0.36 -0.0 4,240,643 - HP15_4005 0.36 +0.9 4,240,834 - HP15_4005 0.45 +0.3 4,240,942 + HP15_4005 0.50 -0.1 4,240,982 - HP15_4005 0.51 +0.9 4,240,997 - HP15_4005 0.52 -0.1 4,241,053 + HP15_4005 0.54 +1.1 4,241,104 - HP15_4005 0.57 -0.1 4,241,138 - HP15_4005 0.58 -0.2 4,241,302 - HP15_4005 0.65 -0.0 4,241,341 - HP15_4005 0.67 +1.4 4,241,587 + HP15_4005 0.78 +0.2 4,241,595 - HP15_4005 0.78 +1.3 4,241,689 - HP15_4005 0.82 +0.6 4,241,692 + HP15_4005 0.83 -0.3 4,241,692 + HP15_4005 0.83 -0.3 4,241,700 - HP15_4005 0.83 +0.6 4,241,867 + -1.1 4,241,867 + +0.0 4,241,867 + +0.4 4,241,895 - +0.1 4,241,986 - -0.4 4,242,056 + +0.1 4,242,064 - -0.3 4,242,068 + -0.3 4,242,129 + +0.8 4,242,216 - HP15_4006 0.12 +0.1 4,242,464 - HP15_4006 0.35 -0.1 4,242,541 + HP15_4006 0.42 +0.1 4,242,624 - HP15_4006 0.50 +0.4 4,242,734 - HP15_4006 0.60 -0.1 4,242,734 - HP15_4006 0.60 +0.5 4,242,790 - HP15_4006 0.65 -0.1 4,242,828 + HP15_4006 0.69 -0.1 4,242,836 - HP15_4006 0.70 +0.1 4,242,867 - HP15_4006 0.73 -0.1 4,242,934 - HP15_4006 0.79 -0.1 4,242,958 - HP15_4006 0.81 -0.6 4,242,968 - HP15_4006 0.82 +0.2
Or see this region's nucleotide sequence