Strain Fitness in Marinobacter adhaerens HP15 around HP15_3969

Experiment: m.b. Aluminum chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3967 and HP15_3968 overlap by 4 nucleotidesHP15_3968 and HP15_3969 are separated by 31 nucleotidesHP15_3969 and HP15_3970 overlap by 17 nucleotidesHP15_3970 and HP15_3971 are separated by 4 nucleotides HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702 _3967 HP15_3968: HP15_3968 - two component transcriptional regulator, winged helix family, at 4,197,699 to 4,198,373 _3968 HP15_3969: HP15_3969 - glycosyl transferase, family 39, at 4,198,405 to 4,199,952 _3969 HP15_3970: HP15_3970 - glycosyl transferase, group 2 family protein, at 4,199,936 to 4,200,910 _3970 HP15_3971: HP15_3971 - GtrA family protein, at 4,200,915 to 4,201,289 _3971 Position (kb) 4198 4199 4200Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4197.455 kb on - strand, within HP15_3967at 4197.470 kb on - strand, within HP15_3967at 4197.474 kb on - strand, within HP15_3967at 4197.506 kb on - strand, within HP15_3967at 4197.545 kb on + strand, within HP15_3967at 4197.552 kb on - strand, within HP15_3967at 4197.555 kb on + strand, within HP15_3967at 4197.574 kb on + strandat 4197.716 kb on + strandat 4197.724 kb on + strandat 4197.809 kb on + strand, within HP15_3968at 4197.809 kb on + strand, within HP15_3968at 4197.809 kb on + strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.817 kb on - strand, within HP15_3968at 4197.823 kb on - strand, within HP15_3968at 4197.844 kb on - strand, within HP15_3968at 4197.852 kb on - strand, within HP15_3968at 4197.884 kb on + strand, within HP15_3968at 4197.901 kb on + strand, within HP15_3968at 4197.998 kb on + strand, within HP15_3968at 4198.006 kb on - strand, within HP15_3968at 4198.114 kb on - strand, within HP15_3968at 4198.226 kb on - strand, within HP15_3968at 4198.257 kb on + strand, within HP15_3968at 4198.281 kb on - strand, within HP15_3968at 4198.316 kb on - strandat 4198.347 kb on - strandat 4198.567 kb on - strand, within HP15_3969at 4198.608 kb on + strand, within HP15_3969at 4198.701 kb on - strand, within HP15_3969at 4198.707 kb on - strand, within HP15_3969at 4198.708 kb on - strand, within HP15_3969at 4198.775 kb on + strand, within HP15_3969at 4198.797 kb on + strand, within HP15_3969at 4198.805 kb on - strand, within HP15_3969at 4198.850 kb on + strand, within HP15_3969at 4198.862 kb on - strand, within HP15_3969at 4198.898 kb on - strand, within HP15_3969at 4198.977 kb on + strand, within HP15_3969at 4199.004 kb on - strand, within HP15_3969at 4199.132 kb on - strand, within HP15_3969at 4199.153 kb on - strand, within HP15_3969at 4199.246 kb on + strand, within HP15_3969at 4199.246 kb on + strand, within HP15_3969at 4199.274 kb on - strand, within HP15_3969at 4199.393 kb on - strand, within HP15_3969at 4199.400 kb on + strand, within HP15_3969at 4199.410 kb on - strand, within HP15_3969at 4199.454 kb on + strand, within HP15_3969at 4199.462 kb on - strand, within HP15_3969at 4199.478 kb on + strand, within HP15_3969at 4199.478 kb on + strand, within HP15_3969at 4199.486 kb on - strand, within HP15_3969at 4199.486 kb on - strand, within HP15_3969at 4199.488 kb on + strand, within HP15_3969at 4199.488 kb on + strand, within HP15_3969at 4199.499 kb on + strand, within HP15_3969at 4199.499 kb on + strand, within HP15_3969at 4199.554 kb on + strand, within HP15_3969at 4199.554 kb on + strand, within HP15_3969at 4199.554 kb on + strand, within HP15_3969at 4199.562 kb on - strand, within HP15_3969at 4199.562 kb on - strand, within HP15_3969at 4199.562 kb on - strand, within HP15_3969at 4199.652 kb on + strand, within HP15_3969at 4199.732 kb on + strand, within HP15_3969at 4199.760 kb on - strand, within HP15_3969at 4199.799 kb on + strandat 4199.853 kb on + strandat 4199.888 kb on + strandat 4199.888 kb on + strandat 4200.050 kb on - strand, within HP15_3970at 4200.102 kb on - strand, within HP15_3970at 4200.128 kb on + strand, within HP15_3970at 4200.229 kb on - strand, within HP15_3970at 4200.418 kb on + strand, within HP15_3970at 4200.426 kb on - strand, within HP15_3970at 4200.426 kb on - strand, within HP15_3970at 4200.426 kb on - strand, within HP15_3970at 4200.428 kb on + strand, within HP15_3970at 4200.450 kb on - strand, within HP15_3970at 4200.533 kb on + strand, within HP15_3970at 4200.584 kb on - strand, within HP15_3970at 4200.621 kb on - strand, within HP15_3970at 4200.623 kb on + strand, within HP15_3970at 4200.641 kb on + strand, within HP15_3970at 4200.677 kb on - strand, within HP15_3970at 4200.677 kb on - strand, within HP15_3970at 4200.774 kb on - strand, within HP15_3970at 4200.865 kb on + strandat 4200.915 kb on - strandat 4200.917 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
remove
4,197,455 - HP15_3967 0.82 -2.3
4,197,470 - HP15_3967 0.84 -5.0
4,197,474 - HP15_3967 0.84 -1.3
4,197,506 - HP15_3967 0.86 -2.3
4,197,545 + HP15_3967 0.89 -1.5
4,197,552 - HP15_3967 0.89 -2.1
4,197,555 + HP15_3967 0.90 -2.8
4,197,574 + -0.8
4,197,716 + -3.8
4,197,724 + -4.3
4,197,809 + HP15_3968 0.16 -5.1
4,197,809 + HP15_3968 0.16 -2.3
4,197,809 + HP15_3968 0.16 -2.4
4,197,817 - HP15_3968 0.17 -3.4
4,197,817 - HP15_3968 0.17 -3.0
4,197,817 - HP15_3968 0.17 -2.6
4,197,823 - HP15_3968 0.18 -4.6
4,197,844 - HP15_3968 0.21 -2.5
4,197,852 - HP15_3968 0.23 -4.0
4,197,884 + HP15_3968 0.27 -3.8
4,197,901 + HP15_3968 0.30 -3.0
4,197,998 + HP15_3968 0.44 -2.4
4,198,006 - HP15_3968 0.45 -4.3
4,198,114 - HP15_3968 0.61 -3.4
4,198,226 - HP15_3968 0.78 -4.0
4,198,257 + HP15_3968 0.83 -2.9
4,198,281 - HP15_3968 0.86 -2.5
4,198,316 - -3.2
4,198,347 - -4.3
4,198,567 - HP15_3969 0.10 -4.6
4,198,608 + HP15_3969 0.13 -2.5
4,198,701 - HP15_3969 0.19 -4.4
4,198,707 - HP15_3969 0.20 -3.5
4,198,708 - HP15_3969 0.20 -4.1
4,198,775 + HP15_3969 0.24 -2.4
4,198,797 + HP15_3969 0.25 -3.1
4,198,805 - HP15_3969 0.26 -3.7
4,198,850 + HP15_3969 0.29 -3.5
4,198,862 - HP15_3969 0.30 -3.4
4,198,898 - HP15_3969 0.32 -3.4
4,198,977 + HP15_3969 0.37 -3.5
4,199,004 - HP15_3969 0.39 -2.3
4,199,132 - HP15_3969 0.47 -2.2
4,199,153 - HP15_3969 0.48 -4.0
4,199,246 + HP15_3969 0.54 -2.8
4,199,246 + HP15_3969 0.54 -2.0
4,199,274 - HP15_3969 0.56 -4.2
4,199,393 - HP15_3969 0.64 -2.6
4,199,400 + HP15_3969 0.64 -3.6
4,199,410 - HP15_3969 0.65 -2.8
4,199,454 + HP15_3969 0.68 -3.1
4,199,462 - HP15_3969 0.68 -4.5
4,199,478 + HP15_3969 0.69 -4.6
4,199,478 + HP15_3969 0.69 -3.5
4,199,486 - HP15_3969 0.70 -1.7
4,199,486 - HP15_3969 0.70 -4.9
4,199,488 + HP15_3969 0.70 -3.6
4,199,488 + HP15_3969 0.70 -3.7
4,199,499 + HP15_3969 0.71 -3.1
4,199,499 + HP15_3969 0.71 -4.8
4,199,554 + HP15_3969 0.74 -5.8
4,199,554 + HP15_3969 0.74 -1.5
4,199,554 + HP15_3969 0.74 -4.2
4,199,562 - HP15_3969 0.75 -3.8
4,199,562 - HP15_3969 0.75 -5.0
4,199,562 - HP15_3969 0.75 -3.9
4,199,652 + HP15_3969 0.81 -2.9
4,199,732 + HP15_3969 0.86 -2.1
4,199,760 - HP15_3969 0.88 -3.8
4,199,799 + -3.8
4,199,853 + -4.0
4,199,888 + -3.3
4,199,888 + -2.6
4,200,050 - HP15_3970 0.12 -4.1
4,200,102 - HP15_3970 0.17 -4.1
4,200,128 + HP15_3970 0.20 -1.7
4,200,229 - HP15_3970 0.30 -2.4
4,200,418 + HP15_3970 0.49 -3.5
4,200,426 - HP15_3970 0.50 -1.5
4,200,426 - HP15_3970 0.50 -2.1
4,200,426 - HP15_3970 0.50 -2.3
4,200,428 + HP15_3970 0.50 -5.0
4,200,450 - HP15_3970 0.53 -3.3
4,200,533 + HP15_3970 0.61 -4.3
4,200,584 - HP15_3970 0.66 -4.2
4,200,621 - HP15_3970 0.70 -3.4
4,200,623 + HP15_3970 0.70 -1.3
4,200,641 + HP15_3970 0.72 -2.8
4,200,677 - HP15_3970 0.76 -0.8
4,200,677 - HP15_3970 0.76 -0.9
4,200,774 - HP15_3970 0.86 -1.4
4,200,865 + -2.9
4,200,915 - -4.3
4,200,917 + -1.5

Or see this region's nucleotide sequence