Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00160 and PGA1_65p00170 are separated by 388 nucleotides PGA1_65p00170 and PGA1_65p00180 are separated by 354 nucleotides PGA1_65p00180 and PGA1_65p00190 are separated by 21 nucleotides
PGA1_65p00160: PGA1_65p00160 - Bacterial putative lipoprotein (DUF940)., at 19,771 to 21,903
_65p00160
PGA1_65p00170: PGA1_65p00170 - putative capsular polysaccharide biosynthesis protein, at 22,292 to 24,139
_65p00170
PGA1_65p00180: PGA1_65p00180 - putative sugar transferase, at 24,494 to 25,105
_65p00180
PGA1_65p00190: PGA1_65p00190 - putative NAD dependent epimerase/dehydratase, at 25,127 to 26,176
_65p00190
Position (kb)
22
23
24
25 Strain fitness (log2 ratio)
-1
0
1 at 21.609 kb on + strand at 21.696 kb on + strand at 21.839 kb on - strand at 21.999 kb on + strand at 22.136 kb on + strand at 22.220 kb on + strand at 22.386 kb on + strand at 22.394 kb on - strand at 22.480 kb on + strand, within PGA1_65p00170 at 22.480 kb on + strand, within PGA1_65p00170 at 22.691 kb on - strand, within PGA1_65p00170 at 23.094 kb on + strand, within PGA1_65p00170 at 23.094 kb on - strand, within PGA1_65p00170 at 23.234 kb on - strand, within PGA1_65p00170 at 23.244 kb on - strand, within PGA1_65p00170 at 23.259 kb on + strand, within PGA1_65p00170 at 23.477 kb on - strand, within PGA1_65p00170 at 23.504 kb on - strand, within PGA1_65p00170 at 23.514 kb on - strand, within PGA1_65p00170 at 23.723 kb on - strand, within PGA1_65p00170 at 23.833 kb on - strand, within PGA1_65p00170 at 23.838 kb on - strand, within PGA1_65p00170 at 23.856 kb on - strand, within PGA1_65p00170 at 23.879 kb on + strand, within PGA1_65p00170 at 23.894 kb on - strand, within PGA1_65p00170 at 23.926 kb on + strand, within PGA1_65p00170 at 24.023 kb on + strand at 24.023 kb on + strand at 24.046 kb on - strand at 24.052 kb on + strand at 24.092 kb on + strand at 24.184 kb on + strand at 24.294 kb on + strand at 24.302 kb on - strand at 24.394 kb on - strand at 24.428 kb on - strand at 24.490 kb on + strand at 24.498 kb on - strand at 24.612 kb on + strand, within PGA1_65p00180 at 24.926 kb on + strand, within PGA1_65p00180 at 24.944 kb on + strand, within PGA1_65p00180 at 24.963 kb on - strand, within PGA1_65p00180 at 24.971 kb on - strand, within PGA1_65p00180 at 24.971 kb on - strand, within PGA1_65p00180 at 24.989 kb on - strand, within PGA1_65p00180 at 25.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 21,609 + +1.2 21,696 + -0.0 21,839 - +0.6 21,999 + +0.3 22,136 + +0.7 22,220 + +0.2 22,386 + -0.8 22,394 - -0.9 22,480 + PGA1_65p00170 0.10 +1.6 22,480 + PGA1_65p00170 0.10 -0.7 22,691 - PGA1_65p00170 0.22 -0.1 23,094 + PGA1_65p00170 0.43 +1.1 23,094 - PGA1_65p00170 0.43 +0.4 23,234 - PGA1_65p00170 0.51 +0.2 23,244 - PGA1_65p00170 0.52 -0.9 23,259 + PGA1_65p00170 0.52 -0.3 23,477 - PGA1_65p00170 0.64 -1.1 23,504 - PGA1_65p00170 0.66 +1.1 23,514 - PGA1_65p00170 0.66 +0.5 23,723 - PGA1_65p00170 0.77 +0.7 23,833 - PGA1_65p00170 0.83 +1.3 23,838 - PGA1_65p00170 0.84 +1.5 23,856 - PGA1_65p00170 0.85 +0.5 23,879 + PGA1_65p00170 0.86 +0.8 23,894 - PGA1_65p00170 0.87 -1.2 23,926 + PGA1_65p00170 0.88 +1.2 24,023 + -0.1 24,023 + +1.0 24,046 - +0.0 24,052 + +0.5 24,092 + -0.1 24,184 + -0.3 24,294 + +0.5 24,302 - +0.5 24,394 - -0.6 24,428 - -0.5 24,490 + +0.7 24,498 - -0.1 24,612 + PGA1_65p00180 0.19 +0.5 24,926 + PGA1_65p00180 0.71 +1.2 24,944 + PGA1_65p00180 0.74 -1.5 24,963 - PGA1_65p00180 0.77 +1.0 24,971 - PGA1_65p00180 0.78 +0.8 24,971 - PGA1_65p00180 0.78 +0.9 24,989 - PGA1_65p00180 0.81 -0.9 25,057 + -0.2
Or see this region's nucleotide sequence