Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00240 and PGA1_78p00250 are separated by 92 nucleotides PGA1_78p00250 and PGA1_78p00260 are separated by 165 nucleotides PGA1_78p00260 and PGA1_78p00270 are separated by 36 nucleotides
PGA1_78p00240: PGA1_78p00240 - Uncharacterized protein conserved in bacteria, at 27,819 to 30,284
_78p00240
PGA1_78p00250: PGA1_78p00250 - putative HTH-type transcriptional regulator, at 30,377 to 30,988
_78p00250
PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536
_78p00260
PGA1_78p00270: PGA1_78p00270 - lipoyl synthase LipA, at 32,573 to 33,541
_78p00270
Position (kb) 31
32
33 Strain fitness (log2 ratio) -1
0
1 at 30.437 kb on + strand at 30.644 kb on - strand, within PGA1_78p00250 at 30.644 kb on - strand, within PGA1_78p00250 at 30.689 kb on - strand, within PGA1_78p00250 at 30.919 kb on + strand, within PGA1_78p00250 at 31.115 kb on + strand at 31.315 kb on + strand, within PGA1_78p00260 at 31.644 kb on + strand, within PGA1_78p00260 at 32.242 kb on - strand, within PGA1_78p00260 at 32.564 kb on - strand at 33.155 kb on + strand, within PGA1_78p00270 at 33.351 kb on - strand, within PGA1_78p00270 at 33.366 kb on + strand, within PGA1_78p00270 at 33.374 kb on - strand, within PGA1_78p00270 at 33.434 kb on + strand, within PGA1_78p00270 at 33.434 kb on + strand, within PGA1_78p00270 at 33.442 kb on - strand, within PGA1_78p00270 at 33.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 30,437 + -1.4 30,644 - PGA1_78p00250 0.44 -0.3 30,644 - PGA1_78p00250 0.44 -0.2 30,689 - PGA1_78p00250 0.51 +0.7 30,919 + PGA1_78p00250 0.89 -0.6 31,115 + +0.9 31,315 + PGA1_78p00260 0.12 -0.5 31,644 + PGA1_78p00260 0.35 -0.8 32,242 - PGA1_78p00260 0.79 +0.9 32,564 - -0.9 33,155 + PGA1_78p00270 0.60 +0.9 33,351 - PGA1_78p00270 0.80 -0.8 33,366 + PGA1_78p00270 0.82 -0.9 33,374 - PGA1_78p00270 0.83 +0.7 33,434 + PGA1_78p00270 0.89 -0.2 33,434 + PGA1_78p00270 0.89 +0.9 33,442 - PGA1_78p00270 0.90 +1.0 33,511 + -1.1
Or see this region's nucleotide sequence