Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01380 and PGA1_262p01390 are separated by 3 nucleotides PGA1_262p01390 and PGA1_262p01400 are separated by 144 nucleotides PGA1_262p01400 and PGA1_262p01410 are separated by 91 nucleotides
PGA1_262p01380: PGA1_262p01380 - aldehyde dehydrogenase, at 148,616 to 150,067
_262p01380
PGA1_262p01390: PGA1_262p01390 - hypothetical protein, at 150,071 to 150,310
_262p01390
PGA1_262p01400: PGA1_262p01400 - dimethylglycine dehydrogenase DmgdH, at 150,455 to 152,875
_262p01400
PGA1_262p01410: PGA1_262p01410 - malate/L-lactate dehydrogenase-like protein, at 152,967 to 153,404
_262p01410
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -1
0
1
2
3 at 149.471 kb on + strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.726 kb on + strand, within PGA1_262p01380 at 149.726 kb on + strand, within PGA1_262p01380 at 149.918 kb on + strand, within PGA1_262p01380 at 149.926 kb on - strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.027 kb on - strand at 150.027 kb on - strand at 150.066 kb on + strand at 150.092 kb on - strand at 150.134 kb on - strand, within PGA1_262p01390 at 150.150 kb on - strand, within PGA1_262p01390 at 150.267 kb on - strand, within PGA1_262p01390 at 150.278 kb on + strand, within PGA1_262p01390 at 150.286 kb on - strand, within PGA1_262p01390 at 150.286 kb on - strand, within PGA1_262p01390 at 150.358 kb on + strand at 150.366 kb on - strand at 150.447 kb on + strand at 150.470 kb on - strand at 150.558 kb on + strand at 150.588 kb on + strand at 150.689 kb on + strand at 150.697 kb on - strand, within PGA1_262p01400 at 150.706 kb on + strand, within PGA1_262p01400 at 150.729 kb on - strand, within PGA1_262p01400 at 150.734 kb on - strand, within PGA1_262p01400 at 150.778 kb on + strand, within PGA1_262p01400 at 150.813 kb on + strand, within PGA1_262p01400 at 150.823 kb on + strand, within PGA1_262p01400 at 150.830 kb on + strand, within PGA1_262p01400 at 151.036 kb on - strand, within PGA1_262p01400 at 151.074 kb on - strand, within PGA1_262p01400 at 151.229 kb on + strand, within PGA1_262p01400 at 151.243 kb on + strand, within PGA1_262p01400 at 151.642 kb on + strand, within PGA1_262p01400 at 151.687 kb on + strand, within PGA1_262p01400 at 151.692 kb on + strand, within PGA1_262p01400 at 151.700 kb on - strand, within PGA1_262p01400 at 151.789 kb on + strand, within PGA1_262p01400 at 151.926 kb on + strand, within PGA1_262p01400 at 151.926 kb on + strand, within PGA1_262p01400 at 151.934 kb on - strand, within PGA1_262p01400 at 151.986 kb on - strand, within PGA1_262p01400 at 152.006 kb on - strand, within PGA1_262p01400 at 152.418 kb on - strand, within PGA1_262p01400 at 152.423 kb on + strand, within PGA1_262p01400 at 152.446 kb on - strand, within PGA1_262p01400 at 152.749 kb on - strand at 152.792 kb on - strand at 152.792 kb on - strand at 152.856 kb on + strand at 153.193 kb on + strand, within PGA1_262p01410 at 153.201 kb on - strand, within PGA1_262p01410 at 153.342 kb on - strand, within PGA1_262p01410 at 153.367 kb on - strand at 153.369 kb on - strand at 153.648 kb on - strand at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 149,471 + PGA1_262p01380 0.59 +0.0 149,536 - PGA1_262p01380 0.63 -0.2 149,536 - PGA1_262p01380 0.63 +0.4 149,726 + PGA1_262p01380 0.76 -0.9 149,726 + PGA1_262p01380 0.76 +0.2 149,918 + PGA1_262p01380 0.90 -1.7 149,926 - -0.1 150,019 + +0.5 150,019 + -0.8 150,019 + -0.5 150,019 + +0.1 150,027 - +0.4 150,027 - +0.7 150,066 + -0.5 150,092 - +0.3 150,134 - PGA1_262p01390 0.26 -0.7 150,150 - PGA1_262p01390 0.33 +3.1 150,267 - PGA1_262p01390 0.82 -0.8 150,278 + PGA1_262p01390 0.86 +0.9 150,286 - PGA1_262p01390 0.90 -0.3 150,286 - PGA1_262p01390 0.90 +0.4 150,358 + +0.5 150,366 - +0.9 150,447 + -0.8 150,470 - -0.0 150,558 + +0.5 150,588 + +0.7 150,689 + -0.7 150,697 - PGA1_262p01400 0.10 -0.5 150,706 + PGA1_262p01400 0.10 -1.0 150,729 - PGA1_262p01400 0.11 +0.0 150,734 - PGA1_262p01400 0.12 +0.6 150,778 + PGA1_262p01400 0.13 +1.0 150,813 + PGA1_262p01400 0.15 +0.9 150,823 + PGA1_262p01400 0.15 +0.1 150,830 + PGA1_262p01400 0.15 +1.4 151,036 - PGA1_262p01400 0.24 +0.3 151,074 - PGA1_262p01400 0.26 +0.9 151,229 + PGA1_262p01400 0.32 +0.8 151,243 + PGA1_262p01400 0.33 +0.1 151,642 + PGA1_262p01400 0.49 +0.7 151,687 + PGA1_262p01400 0.51 +0.1 151,692 + PGA1_262p01400 0.51 +1.0 151,700 - PGA1_262p01400 0.51 -1.6 151,789 + PGA1_262p01400 0.55 +1.2 151,926 + PGA1_262p01400 0.61 -1.6 151,926 + PGA1_262p01400 0.61 -0.0 151,934 - PGA1_262p01400 0.61 +0.1 151,986 - PGA1_262p01400 0.63 +1.0 152,006 - PGA1_262p01400 0.64 -0.2 152,418 - PGA1_262p01400 0.81 -0.2 152,423 + PGA1_262p01400 0.81 +0.4 152,446 - PGA1_262p01400 0.82 +0.6 152,749 - -0.7 152,792 - +0.3 152,792 - -0.5 152,856 + -0.2 153,193 + PGA1_262p01410 0.52 +0.1 153,201 - PGA1_262p01410 0.53 +0.4 153,342 - PGA1_262p01410 0.86 +0.7 153,367 - +0.4 153,369 - +0.6 153,648 - +0.0 153,691 - +0.3 153,749 - +0.4 153,749 - +1.4
Or see this region's nucleotide sequence