Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00810 and PGA1_262p00820 are separated by 79 nucleotides PGA1_262p00820 and PGA1_262p00830 are separated by 4 nucleotides PGA1_262p00830 and PGA1_262p00840 are separated by 91 nucleotides
PGA1_262p00810: PGA1_262p00810 - putative flavoprotein, HFCD family, at 90,939 to 91,508
_262p00810
PGA1_262p00820: PGA1_262p00820 - hypothetical protein, at 91,588 to 92,028
_262p00820
PGA1_262p00830: PGA1_262p00830 - hypothetical protein, at 92,033 to 93,094
_262p00830
PGA1_262p00840: PGA1_262p00840 - hypothetical protein, at 93,186 to 94,511
_262p00840
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 91.042 kb on + strand, within PGA1_262p00810 at 91.042 kb on + strand, within PGA1_262p00810 at 91.050 kb on - strand, within PGA1_262p00810 at 91.061 kb on + strand, within PGA1_262p00810 at 91.069 kb on - strand, within PGA1_262p00810 at 91.069 kb on - strand, within PGA1_262p00810 at 91.147 kb on - strand, within PGA1_262p00810 at 91.265 kb on - strand, within PGA1_262p00810 at 91.293 kb on + strand, within PGA1_262p00810 at 91.375 kb on + strand, within PGA1_262p00810 at 91.569 kb on - strand at 91.585 kb on + strand at 91.791 kb on - strand, within PGA1_262p00820 at 91.871 kb on + strand, within PGA1_262p00820 at 92.236 kb on - strand, within PGA1_262p00830 at 92.374 kb on + strand, within PGA1_262p00830 at 92.616 kb on - strand, within PGA1_262p00830 at 92.667 kb on - strand, within PGA1_262p00830 at 92.680 kb on + strand, within PGA1_262p00830 at 92.689 kb on - strand, within PGA1_262p00830 at 92.713 kb on + strand, within PGA1_262p00830 at 92.796 kb on - strand, within PGA1_262p00830 at 92.935 kb on + strand, within PGA1_262p00830 at 92.943 kb on - strand, within PGA1_262p00830 at 93.240 kb on + strand at 93.411 kb on + strand, within PGA1_262p00840 at 93.513 kb on + strand, within PGA1_262p00840 at 93.582 kb on + strand, within PGA1_262p00840 at 93.588 kb on + strand, within PGA1_262p00840 at 93.646 kb on + strand, within PGA1_262p00840 at 93.654 kb on - strand, within PGA1_262p00840 at 93.662 kb on - strand, within PGA1_262p00840 at 93.680 kb on - strand, within PGA1_262p00840 at 93.709 kb on + strand, within PGA1_262p00840 at 93.922 kb on - strand, within PGA1_262p00840 at 93.924 kb on + strand, within PGA1_262p00840 at 93.929 kb on + strand, within PGA1_262p00840 at 93.982 kb on - strand, within PGA1_262p00840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 91,042 + PGA1_262p00810 0.18 -1.4 91,042 + PGA1_262p00810 0.18 +0.1 91,050 - PGA1_262p00810 0.19 -0.2 91,061 + PGA1_262p00810 0.21 -0.0 91,069 - PGA1_262p00810 0.23 +0.2 91,069 - PGA1_262p00810 0.23 +1.2 91,147 - PGA1_262p00810 0.36 -0.3 91,265 - PGA1_262p00810 0.57 -0.5 91,293 + PGA1_262p00810 0.62 +0.4 91,375 + PGA1_262p00810 0.76 -0.5 91,569 - -0.2 91,585 + +0.8 91,791 - PGA1_262p00820 0.46 -0.6 91,871 + PGA1_262p00820 0.64 -0.2 92,236 - PGA1_262p00830 0.19 -1.9 92,374 + PGA1_262p00830 0.32 +0.8 92,616 - PGA1_262p00830 0.55 +1.0 92,667 - PGA1_262p00830 0.60 +0.3 92,680 + PGA1_262p00830 0.61 +0.8 92,689 - PGA1_262p00830 0.62 +0.4 92,713 + PGA1_262p00830 0.64 +0.7 92,796 - PGA1_262p00830 0.72 -1.1 92,935 + PGA1_262p00830 0.85 +0.3 92,943 - PGA1_262p00830 0.86 +0.7 93,240 + +0.1 93,411 + PGA1_262p00840 0.17 -1.2 93,513 + PGA1_262p00840 0.25 +0.7 93,582 + PGA1_262p00840 0.30 +0.1 93,588 + PGA1_262p00840 0.30 -0.3 93,646 + PGA1_262p00840 0.35 +0.1 93,654 - PGA1_262p00840 0.35 -0.8 93,662 - PGA1_262p00840 0.36 +0.5 93,680 - PGA1_262p00840 0.37 -1.4 93,709 + PGA1_262p00840 0.39 -0.6 93,922 - PGA1_262p00840 0.56 +0.4 93,924 + PGA1_262p00840 0.56 -0.3 93,929 + PGA1_262p00840 0.56 +0.8 93,982 - PGA1_262p00840 0.60 +0.1
Or see this region's nucleotide sequence