Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00300 and PGA1_262p00310 are separated by 67 nucleotides PGA1_262p00310 and PGA1_262p00320 overlap by 4 nucleotides PGA1_262p00320 and PGA1_262p00330 are separated by 13 nucleotides
PGA1_262p00300: PGA1_262p00300 - ABC transporter, extracellular solute-binding protein, at 33,414 to 35,000
_262p00300
PGA1_262p00310: PGA1_262p00310 - glutathione transport system permease protein GsiC, at 35,068 to 36,009
_262p00310
PGA1_262p00320: PGA1_262p00320 - ABC transporter, inner membrane component, at 36,006 to 36,872
_262p00320
PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884
_262p00330
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1 at 34.198 kb on - strand, within PGA1_262p00300 at 34.258 kb on - strand, within PGA1_262p00300 at 34.383 kb on - strand, within PGA1_262p00300 at 34.457 kb on + strand, within PGA1_262p00300 at 34.488 kb on - strand, within PGA1_262p00300 at 34.504 kb on - strand, within PGA1_262p00300 at 34.923 kb on - strand at 34.955 kb on - strand at 35.105 kb on - strand at 35.288 kb on - strand, within PGA1_262p00310 at 35.290 kb on + strand, within PGA1_262p00310 at 35.296 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.307 kb on - strand, within PGA1_262p00310 at 35.453 kb on + strand, within PGA1_262p00310 at 35.474 kb on - strand, within PGA1_262p00310 at 35.624 kb on + strand, within PGA1_262p00310 at 35.920 kb on + strand at 36.023 kb on + strand at 36.154 kb on + strand, within PGA1_262p00320 at 36.242 kb on - strand, within PGA1_262p00320 at 36.376 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.491 kb on - strand, within PGA1_262p00320 at 36.515 kb on - strand, within PGA1_262p00320 at 36.632 kb on - strand, within PGA1_262p00320 at 36.882 kb on + strand at 36.927 kb on + strand at 36.955 kb on + strand at 36.983 kb on + strand at 36.999 kb on + strand, within PGA1_262p00330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 34,198 - PGA1_262p00300 0.49 -1.4 34,258 - PGA1_262p00300 0.53 +0.6 34,383 - PGA1_262p00300 0.61 -0.4 34,457 + PGA1_262p00300 0.66 -0.5 34,488 - PGA1_262p00300 0.68 -0.3 34,504 - PGA1_262p00300 0.69 +0.0 34,923 - +0.3 34,955 - +0.0 35,105 - +0.5 35,288 - PGA1_262p00310 0.23 -0.4 35,290 + PGA1_262p00310 0.24 +1.1 35,296 - PGA1_262p00310 0.24 +1.7 35,298 - PGA1_262p00310 0.24 +0.3 35,298 - PGA1_262p00310 0.24 +1.2 35,307 - PGA1_262p00310 0.25 +1.2 35,453 + PGA1_262p00310 0.41 -1.5 35,474 - PGA1_262p00310 0.43 +1.0 35,624 + PGA1_262p00310 0.59 -0.4 35,920 + +0.4 36,023 + +0.4 36,154 + PGA1_262p00320 0.17 -0.1 36,242 - PGA1_262p00320 0.27 +0.1 36,376 - PGA1_262p00320 0.43 +0.3 36,425 - PGA1_262p00320 0.48 +1.0 36,425 - PGA1_262p00320 0.48 -1.1 36,491 - PGA1_262p00320 0.56 +0.1 36,515 - PGA1_262p00320 0.59 +0.8 36,632 - PGA1_262p00320 0.72 -0.2 36,882 + +0.3 36,927 + +1.3 36,955 + +0.1 36,983 + +0.1 36,999 + PGA1_262p00330 0.11 +0.6
Or see this region's nucleotide sequence