Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00100 and PGA1_262p00110 are separated by 4 nucleotides PGA1_262p00110 and PGA1_262p00120 are separated by 3 nucleotides PGA1_262p00120 and PGA1_262p00130 overlap by 97 nucleotides
PGA1_262p00100: PGA1_262p00100 - putative glycosyl transferase, at 12,316 to 13,404
_262p00100
PGA1_262p00110: PGA1_262p00110 - putative glycosyl transferase, at 13,409 to 14,362
_262p00110
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
PGA1_262p00130: PGA1_262p00130 - hypothetical protein, at 15,451 to 16,515
_262p00130
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.548 kb on + strand, within PGA1_262p00110 at 13.600 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.796 kb on - strand, within PGA1_262p00110 at 13.825 kb on - strand, within PGA1_262p00110 at 13.844 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.864 kb on + strand, within PGA1_262p00110 at 13.889 kb on + strand, within PGA1_262p00110 at 13.935 kb on - strand, within PGA1_262p00110 at 13.985 kb on + strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.119 kb on - strand, within PGA1_262p00110 at 14.273 kb on - strand at 14.286 kb on + strand at 14.356 kb on + strand at 14.396 kb on - strand at 14.505 kb on + strand, within PGA1_262p00120 at 14.513 kb on - strand, within PGA1_262p00120 at 14.566 kb on - strand, within PGA1_262p00120 at 14.762 kb on + strand, within PGA1_262p00120 at 14.770 kb on - strand, within PGA1_262p00120 at 14.840 kb on + strand, within PGA1_262p00120 at 14.859 kb on + strand, within PGA1_262p00120 at 14.867 kb on - strand, within PGA1_262p00120 at 14.937 kb on - strand, within PGA1_262p00120 at 15.003 kb on + strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.130 kb on - strand, within PGA1_262p00120 at 15.295 kb on - strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.357 kb on + strand, within PGA1_262p00120 at 15.441 kb on - strand at 15.500 kb on - strand at 15.579 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.767 kb on - strand, within PGA1_262p00130 at 15.871 kb on - strand, within PGA1_262p00130 at 16.102 kb on + strand, within PGA1_262p00130 at 16.137 kb on + strand, within PGA1_262p00130 at 16.253 kb on + strand, within PGA1_262p00130 at 16.280 kb on + strand, within PGA1_262p00130 at 16.385 kb on + strand, within PGA1_262p00130 at 16.423 kb on + strand at 16.483 kb on - strand at 16.483 kb on - strand at 16.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 13,548 + PGA1_262p00110 0.15 -0.8 13,600 - PGA1_262p00110 0.20 -0.1 13,750 - PGA1_262p00110 0.36 -0.7 13,750 - PGA1_262p00110 0.36 -0.5 13,796 - PGA1_262p00110 0.41 -0.2 13,825 - PGA1_262p00110 0.44 -2.0 13,844 + PGA1_262p00110 0.46 -2.4 13,854 + PGA1_262p00110 0.47 -1.0 13,854 + PGA1_262p00110 0.47 -0.4 13,854 + PGA1_262p00110 0.47 -0.5 13,864 + PGA1_262p00110 0.48 -0.9 13,889 + PGA1_262p00110 0.50 -1.4 13,935 - PGA1_262p00110 0.55 +0.7 13,985 + PGA1_262p00110 0.60 -0.1 14,039 - PGA1_262p00110 0.66 -0.9 14,039 - PGA1_262p00110 0.66 -1.9 14,039 - PGA1_262p00110 0.66 +0.1 14,039 - PGA1_262p00110 0.66 -0.4 14,111 + PGA1_262p00110 0.74 -1.2 14,111 + PGA1_262p00110 0.74 -1.1 14,119 - PGA1_262p00110 0.74 -0.0 14,273 - +0.0 14,286 + +0.0 14,356 + -1.2 14,396 - -0.9 14,505 + PGA1_262p00120 0.12 -2.3 14,513 - PGA1_262p00120 0.12 -0.5 14,566 - PGA1_262p00120 0.17 +0.5 14,762 + PGA1_262p00120 0.34 -0.4 14,770 - PGA1_262p00120 0.34 -1.8 14,840 + PGA1_262p00120 0.40 -0.3 14,859 + PGA1_262p00120 0.42 -2.0 14,867 - PGA1_262p00120 0.42 -2.9 14,937 - PGA1_262p00120 0.48 -0.6 15,003 + PGA1_262p00120 0.54 +1.4 15,037 - PGA1_262p00120 0.57 +0.0 15,037 - PGA1_262p00120 0.57 +1.1 15,130 - PGA1_262p00120 0.65 -1.2 15,295 - PGA1_262p00120 0.79 -1.1 15,331 + PGA1_262p00120 0.82 +0.3 15,331 + PGA1_262p00120 0.82 +0.0 15,357 + PGA1_262p00120 0.84 +0.0 15,441 - -2.3 15,500 - -0.2 15,579 + PGA1_262p00130 0.12 -1.2 15,629 + PGA1_262p00130 0.17 -0.6 15,629 + PGA1_262p00130 0.17 -0.7 15,629 + PGA1_262p00130 0.17 -0.4 15,629 + PGA1_262p00130 0.17 +0.5 15,629 + PGA1_262p00130 0.17 -0.4 15,637 - PGA1_262p00130 0.17 -0.0 15,637 - PGA1_262p00130 0.17 -0.1 15,637 - PGA1_262p00130 0.17 -0.7 15,637 - PGA1_262p00130 0.17 -0.2 15,767 - PGA1_262p00130 0.30 +0.5 15,871 - PGA1_262p00130 0.39 -0.4 16,102 + PGA1_262p00130 0.61 -0.0 16,137 + PGA1_262p00130 0.64 -1.3 16,253 + PGA1_262p00130 0.75 +0.1 16,280 + PGA1_262p00130 0.78 +0.9 16,385 + PGA1_262p00130 0.88 -1.7 16,423 + +0.4 16,483 - -0.1 16,483 - +0.0 16,524 + +0.2
Or see this region's nucleotide sequence