Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00350 and PGA1_c00360 are separated by 147 nucleotides PGA1_c00360 and PGA1_c00370 are separated by 52 nucleotides PGA1_c00370 and PGA1_c00380 are separated by 44 nucleotides
PGA1_c00350: PGA1_c00350 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 39,430 to 40,980
_c00350
PGA1_c00360: PGA1_c00360 - oxygen-independent coproporphyrinogen III oxidase HemN, at 41,128 to 42,483
_c00360
PGA1_c00370: PGA1_c00370 - putative nnrU protein, at 42,536 to 43,231
_c00370
PGA1_c00380: PGA1_c00380 - putative maleylacetoacetate isomerase, at 43,276 to 43,962
_c00380
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.156 kb on - strand, within PGA1_c00350 at 40.170 kb on - strand, within PGA1_c00350 at 40.178 kb on - strand, within PGA1_c00350 at 40.241 kb on + strand, within PGA1_c00350 at 40.262 kb on - strand, within PGA1_c00350 at 40.264 kb on - strand, within PGA1_c00350 at 40.264 kb on - strand, within PGA1_c00350 at 40.273 kb on + strand, within PGA1_c00350 at 40.280 kb on + strand, within PGA1_c00350 at 40.331 kb on - strand, within PGA1_c00350 at 40.373 kb on + strand, within PGA1_c00350 at 40.373 kb on + strand, within PGA1_c00350 at 40.381 kb on - strand, within PGA1_c00350 at 40.418 kb on + strand, within PGA1_c00350 at 40.517 kb on - strand, within PGA1_c00350 at 40.518 kb on + strand, within PGA1_c00350 at 40.526 kb on - strand, within PGA1_c00350 at 40.529 kb on - strand, within PGA1_c00350 at 40.589 kb on + strand, within PGA1_c00350 at 40.590 kb on + strand, within PGA1_c00350 at 40.590 kb on + strand, within PGA1_c00350 at 40.590 kb on + strand, within PGA1_c00350 at 40.593 kb on - strand, within PGA1_c00350 at 40.598 kb on + strand, within PGA1_c00350 at 40.598 kb on - strand, within PGA1_c00350 at 40.603 kb on + strand, within PGA1_c00350 at 40.606 kb on - strand, within PGA1_c00350 at 40.616 kb on - strand, within PGA1_c00350 at 40.642 kb on + strand, within PGA1_c00350 at 40.681 kb on + strand, within PGA1_c00350 at 40.735 kb on + strand, within PGA1_c00350 at 40.735 kb on + strand, within PGA1_c00350 at 40.735 kb on + strand, within PGA1_c00350 at 40.743 kb on - strand, within PGA1_c00350 at 40.743 kb on - strand, within PGA1_c00350 at 40.754 kb on + strand, within PGA1_c00350 at 40.762 kb on - strand, within PGA1_c00350 at 40.785 kb on - strand, within PGA1_c00350 at 40.815 kb on + strand, within PGA1_c00350 at 40.829 kb on - strand at 40.829 kb on - strand at 40.845 kb on - strand at 40.850 kb on + strand at 40.858 kb on - strand at 40.858 kb on - strand at 40.892 kb on - strand at 40.941 kb on - strand at 40.944 kb on + strand at 40.951 kb on - strand at 40.954 kb on + strand at 40.954 kb on + strand at 40.983 kb on - strand at 40.983 kb on - strand at 41.074 kb on - strand at 41.074 kb on - strand at 41.074 kb on - strand at 41.076 kb on + strand at 41.076 kb on + strand at 41.084 kb on - strand at 41.100 kb on + strand at 41.142 kb on - strand at 41.142 kb on - strand at 41.206 kb on + strand at 41.206 kb on + strand at 41.207 kb on - strand at 41.214 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.273 kb on + strand, within PGA1_c00360 at 41.275 kb on + strand, within PGA1_c00360 at 41.281 kb on - strand, within PGA1_c00360 at 41.285 kb on + strand, within PGA1_c00360 at 41.292 kb on + strand, within PGA1_c00360 at 41.300 kb on - strand, within PGA1_c00360 at 41.300 kb on - strand, within PGA1_c00360 at 41.317 kb on + strand, within PGA1_c00360 at 41.333 kb on - strand, within PGA1_c00360 at 41.343 kb on - strand, within PGA1_c00360 at 41.361 kb on + strand, within PGA1_c00360 at 41.408 kb on - strand, within PGA1_c00360 at 41.441 kb on + strand, within PGA1_c00360 at 41.499 kb on + strand, within PGA1_c00360 at 41.510 kb on + strand, within PGA1_c00360 at 41.511 kb on + strand, within PGA1_c00360 at 41.511 kb on + strand, within PGA1_c00360 at 41.519 kb on - strand, within PGA1_c00360 at 41.519 kb on - strand, within PGA1_c00360 at 41.524 kb on - strand, within PGA1_c00360 at 41.526 kb on + strand, within PGA1_c00360 at 41.526 kb on + strand, within PGA1_c00360 at 41.534 kb on - strand, within PGA1_c00360 at 41.534 kb on - strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.544 kb on - strand, within PGA1_c00360 at 41.546 kb on + strand, within PGA1_c00360 at 41.560 kb on - strand, within PGA1_c00360 at 41.592 kb on + strand, within PGA1_c00360 at 41.593 kb on + strand, within PGA1_c00360 at 41.593 kb on + strand, within PGA1_c00360 at 41.601 kb on - strand, within PGA1_c00360 at 41.622 kb on + strand, within PGA1_c00360 at 41.627 kb on + strand, within PGA1_c00360 at 41.668 kb on + strand, within PGA1_c00360 at 41.676 kb on - strand, within PGA1_c00360 at 41.709 kb on + strand, within PGA1_c00360 at 41.717 kb on - strand, within PGA1_c00360 at 41.747 kb on + strand, within PGA1_c00360 at 41.777 kb on + strand, within PGA1_c00360 at 41.785 kb on - strand, within PGA1_c00360 at 41.794 kb on + strand, within PGA1_c00360 at 41.794 kb on + strand, within PGA1_c00360 at 41.813 kb on - strand, within PGA1_c00360 at 41.854 kb on + strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.990 kb on - strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 42.085 kb on - strand, within PGA1_c00360 at 42.143 kb on - strand, within PGA1_c00360 at 42.236 kb on - strand, within PGA1_c00360 at 42.248 kb on + strand, within PGA1_c00360 at 42.248 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.256 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.278 kb on - strand, within PGA1_c00360 at 42.281 kb on + strand, within PGA1_c00360 at 42.290 kb on - strand, within PGA1_c00360 at 42.325 kb on + strand, within PGA1_c00360 at 42.327 kb on - strand, within PGA1_c00360 at 42.331 kb on + strand, within PGA1_c00360 at 42.333 kb on - strand, within PGA1_c00360 at 42.336 kb on + strand, within PGA1_c00360 at 42.339 kb on - strand, within PGA1_c00360 at 42.341 kb on + strand, within PGA1_c00360 at 42.344 kb on - strand, within PGA1_c00360 at 42.347 kb on - strand, within PGA1_c00360 at 42.347 kb on - strand, within PGA1_c00360 at 42.349 kb on - strand at 42.375 kb on + strand at 42.383 kb on - strand at 42.388 kb on - strand at 42.402 kb on - strand at 42.404 kb on + strand at 42.410 kb on - strand at 42.420 kb on - strand at 42.421 kb on - strand at 42.422 kb on - strand at 42.422 kb on - strand at 42.430 kb on - strand at 42.501 kb on + strand at 42.501 kb on + strand at 42.511 kb on + strand at 42.511 kb on + strand at 42.511 kb on + strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.542 kb on + strand at 42.542 kb on + strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.558 kb on + strand at 42.591 kb on + strand at 42.622 kb on + strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.677 kb on + strand, within PGA1_c00370 at 42.720 kb on + strand, within PGA1_c00370 at 42.721 kb on - strand, within PGA1_c00370 at 42.749 kb on + strand, within PGA1_c00370 at 42.749 kb on + strand, within PGA1_c00370 at 42.757 kb on - strand, within PGA1_c00370 at 42.827 kb on + strand, within PGA1_c00370 at 42.860 kb on - strand, within PGA1_c00370 at 42.860 kb on - strand, within PGA1_c00370 at 42.865 kb on + strand, within PGA1_c00370 at 42.885 kb on + strand, within PGA1_c00370 at 42.893 kb on - strand, within PGA1_c00370 at 42.899 kb on - strand, within PGA1_c00370 at 42.901 kb on + strand, within PGA1_c00370 at 42.933 kb on + strand, within PGA1_c00370 at 42.939 kb on - strand, within PGA1_c00370 at 42.939 kb on - strand, within PGA1_c00370 at 42.964 kb on - strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.041 kb on - strand, within PGA1_c00370 at 43.098 kb on - strand, within PGA1_c00370 at 43.099 kb on - strand, within PGA1_c00370 at 43.213 kb on - strand at 43.249 kb on + strand at 43.267 kb on - strand at 43.306 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.357 kb on + strand, within PGA1_c00380 at 43.370 kb on - strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.405 kb on + strand, within PGA1_c00380 at 43.415 kb on + strand, within PGA1_c00380 at 43.418 kb on + strand, within PGA1_c00380 at 43.439 kb on - strand, within PGA1_c00380 at 43.452 kb on + strand, within PGA1_c00380 at 43.458 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 40,156 - PGA1_c00350 0.47 -2.1 40,170 - PGA1_c00350 0.48 -2.6 40,178 - PGA1_c00350 0.48 -1.6 40,241 + PGA1_c00350 0.52 -0.5 40,262 - PGA1_c00350 0.54 +0.4 40,264 - PGA1_c00350 0.54 +0.4 40,264 - PGA1_c00350 0.54 -0.5 40,273 + PGA1_c00350 0.54 +0.3 40,280 + PGA1_c00350 0.55 +0.1 40,331 - PGA1_c00350 0.58 -0.7 40,373 + PGA1_c00350 0.61 -2.8 40,373 + PGA1_c00350 0.61 +0.0 40,381 - PGA1_c00350 0.61 -0.4 40,418 + PGA1_c00350 0.64 -0.9 40,517 - PGA1_c00350 0.70 +0.1 40,518 + PGA1_c00350 0.70 -1.6 40,526 - PGA1_c00350 0.71 -1.8 40,529 - PGA1_c00350 0.71 +0.7 40,589 + PGA1_c00350 0.75 -0.8 40,590 + PGA1_c00350 0.75 +0.5 40,590 + PGA1_c00350 0.75 -0.9 40,590 + PGA1_c00350 0.75 +0.8 40,593 - PGA1_c00350 0.75 -0.3 40,598 + PGA1_c00350 0.75 -1.9 40,598 - PGA1_c00350 0.75 +0.3 40,603 + PGA1_c00350 0.76 -0.4 40,606 - PGA1_c00350 0.76 -0.5 40,616 - PGA1_c00350 0.76 -0.9 40,642 + PGA1_c00350 0.78 -0.6 40,681 + PGA1_c00350 0.81 +0.1 40,735 + PGA1_c00350 0.84 -0.8 40,735 + PGA1_c00350 0.84 +1.0 40,735 + PGA1_c00350 0.84 -0.6 40,743 - PGA1_c00350 0.85 -0.1 40,743 - PGA1_c00350 0.85 -2.1 40,754 + PGA1_c00350 0.85 +0.4 40,762 - PGA1_c00350 0.86 -0.4 40,785 - PGA1_c00350 0.87 -0.9 40,815 + PGA1_c00350 0.89 +0.6 40,829 - -1.4 40,829 - +0.1 40,845 - +0.3 40,850 + -1.1 40,858 - +0.7 40,858 - +0.1 40,892 - +0.1 40,941 - -0.2 40,944 + +0.8 40,951 - +0.3 40,954 + +0.4 40,954 + +0.3 40,983 - -0.8 40,983 - +0.9 41,074 - +0.6 41,074 - -0.9 41,074 - +0.8 41,076 + +0.1 41,076 + +0.8 41,084 - +1.0 41,100 + +0.8 41,142 - +0.5 41,142 - -1.5 41,206 + -0.5 41,206 + -0.6 41,207 - +1.9 41,214 - -0.1 41,235 - -1.6 41,235 - -0.8 41,273 + PGA1_c00360 0.11 -0.2 41,275 + PGA1_c00360 0.11 -0.5 41,281 - PGA1_c00360 0.11 +0.2 41,285 + PGA1_c00360 0.12 -0.0 41,292 + PGA1_c00360 0.12 -0.8 41,300 - PGA1_c00360 0.13 -1.2 41,300 - PGA1_c00360 0.13 +0.9 41,317 + PGA1_c00360 0.14 -0.8 41,333 - PGA1_c00360 0.15 -0.2 41,343 - PGA1_c00360 0.16 +0.6 41,361 + PGA1_c00360 0.17 +0.7 41,408 - PGA1_c00360 0.21 +0.6 41,441 + PGA1_c00360 0.23 +0.1 41,499 + PGA1_c00360 0.27 -0.1 41,510 + PGA1_c00360 0.28 -0.1 41,511 + PGA1_c00360 0.28 -1.2 41,511 + PGA1_c00360 0.28 -0.4 41,519 - PGA1_c00360 0.29 +0.4 41,519 - PGA1_c00360 0.29 -0.1 41,524 - PGA1_c00360 0.29 -0.3 41,526 + PGA1_c00360 0.29 +0.9 41,526 + PGA1_c00360 0.29 -1.8 41,534 - PGA1_c00360 0.30 +0.7 41,534 - PGA1_c00360 0.30 -1.2 41,536 + PGA1_c00360 0.30 -1.8 41,536 + PGA1_c00360 0.30 +0.8 41,536 + PGA1_c00360 0.30 -0.4 41,536 + PGA1_c00360 0.30 -0.2 41,536 + PGA1_c00360 0.30 +0.2 41,544 - PGA1_c00360 0.31 -0.8 41,546 + PGA1_c00360 0.31 -0.5 41,560 - PGA1_c00360 0.32 +0.0 41,592 + PGA1_c00360 0.34 -0.2 41,593 + PGA1_c00360 0.34 -0.9 41,593 + PGA1_c00360 0.34 -1.0 41,601 - PGA1_c00360 0.35 -1.2 41,622 + PGA1_c00360 0.36 -0.0 41,627 + PGA1_c00360 0.37 -2.5 41,668 + PGA1_c00360 0.40 -1.2 41,676 - PGA1_c00360 0.40 +0.6 41,709 + PGA1_c00360 0.43 +0.8 41,717 - PGA1_c00360 0.43 -0.6 41,747 + PGA1_c00360 0.46 -0.3 41,777 + PGA1_c00360 0.48 +0.9 41,785 - PGA1_c00360 0.48 +0.7 41,794 + PGA1_c00360 0.49 +1.5 41,794 + PGA1_c00360 0.49 +0.4 41,813 - PGA1_c00360 0.51 -1.8 41,854 + PGA1_c00360 0.54 +0.9 41,883 - PGA1_c00360 0.56 -1.2 41,883 - PGA1_c00360 0.56 -0.2 41,883 - PGA1_c00360 0.56 -0.7 41,990 - PGA1_c00360 0.64 +0.0 41,992 + PGA1_c00360 0.64 -2.0 41,992 + PGA1_c00360 0.64 -0.7 41,992 + PGA1_c00360 0.64 -1.2 42,085 - PGA1_c00360 0.71 -0.8 42,143 - PGA1_c00360 0.75 -0.5 42,236 - PGA1_c00360 0.82 -0.6 42,248 + PGA1_c00360 0.83 +0.4 42,248 + PGA1_c00360 0.83 +0.3 42,249 + PGA1_c00360 0.83 -0.1 42,249 + PGA1_c00360 0.83 +0.2 42,249 + PGA1_c00360 0.83 +0.3 42,249 + PGA1_c00360 0.83 -0.1 42,249 + PGA1_c00360 0.83 +0.9 42,249 + PGA1_c00360 0.83 +0.3 42,256 - PGA1_c00360 0.83 +0.3 42,257 - PGA1_c00360 0.83 -0.4 42,257 - PGA1_c00360 0.83 -0.9 42,257 - PGA1_c00360 0.83 +0.4 42,257 - PGA1_c00360 0.83 +0.0 42,257 - PGA1_c00360 0.83 +0.4 42,257 - PGA1_c00360 0.83 -0.4 42,257 - PGA1_c00360 0.83 -1.6 42,257 - PGA1_c00360 0.83 +0.2 42,257 - PGA1_c00360 0.83 -0.7 42,257 - PGA1_c00360 0.83 -1.0 42,257 - PGA1_c00360 0.83 -1.6 42,257 - PGA1_c00360 0.83 -1.2 42,278 - PGA1_c00360 0.85 -0.2 42,281 + PGA1_c00360 0.85 +0.3 42,290 - PGA1_c00360 0.86 -1.8 42,325 + PGA1_c00360 0.88 -0.8 42,327 - PGA1_c00360 0.88 +0.5 42,331 + PGA1_c00360 0.89 -0.6 42,333 - PGA1_c00360 0.89 -0.3 42,336 + PGA1_c00360 0.89 +0.2 42,339 - PGA1_c00360 0.89 -0.1 42,341 + PGA1_c00360 0.89 -0.8 42,344 - PGA1_c00360 0.90 -1.0 42,347 - PGA1_c00360 0.90 -2.2 42,347 - PGA1_c00360 0.90 -0.4 42,349 - -0.3 42,375 + -0.8 42,383 - -0.9 42,388 - -1.6 42,402 - -0.5 42,404 + -1.5 42,410 - +0.2 42,420 - +0.3 42,421 - -0.3 42,422 - -1.3 42,422 - -0.5 42,430 - -1.3 42,501 + +1.0 42,501 + -0.5 42,511 + +0.9 42,511 + +0.3 42,511 + -0.0 42,519 - -0.4 42,519 - +0.2 42,519 - -0.2 42,519 - -0.9 42,542 + -1.0 42,542 + -0.1 42,550 - -1.2 42,550 - -0.6 42,550 - +1.1 42,550 - +0.2 42,550 - -1.0 42,550 - +1.1 42,550 - -1.6 42,550 - +0.7 42,558 + -0.9 42,591 + -0.1 42,622 + PGA1_c00370 0.12 +0.9 42,630 - PGA1_c00370 0.14 +1.1 42,630 - PGA1_c00370 0.14 +1.3 42,630 - PGA1_c00370 0.14 +0.0 42,677 + PGA1_c00370 0.20 -0.0 42,720 + PGA1_c00370 0.26 +1.2 42,721 - PGA1_c00370 0.27 -0.8 42,749 + PGA1_c00370 0.31 -0.2 42,749 + PGA1_c00370 0.31 -0.4 42,757 - PGA1_c00370 0.32 -0.2 42,827 + PGA1_c00370 0.42 +1.0 42,860 - PGA1_c00370 0.47 +0.3 42,860 - PGA1_c00370 0.47 -0.4 42,865 + PGA1_c00370 0.47 -0.8 42,885 + PGA1_c00370 0.50 +0.3 42,893 - PGA1_c00370 0.51 +0.3 42,899 - PGA1_c00370 0.52 +0.4 42,901 + PGA1_c00370 0.52 -1.5 42,933 + PGA1_c00370 0.57 +1.1 42,939 - PGA1_c00370 0.58 -0.6 42,939 - PGA1_c00370 0.58 -0.5 42,964 - PGA1_c00370 0.61 -1.4 43,033 + PGA1_c00370 0.71 +0.8 43,033 + PGA1_c00370 0.71 +0.9 43,041 - PGA1_c00370 0.73 -0.4 43,098 - PGA1_c00370 0.81 -1.3 43,099 - PGA1_c00370 0.81 -0.1 43,213 - +0.6 43,249 + -1.1 43,267 - +0.2 43,306 + +0.7 43,316 + +1.3 43,316 + +1.4 43,316 + -0.1 43,357 + PGA1_c00380 0.12 +1.0 43,370 - PGA1_c00380 0.14 -0.2 43,401 + PGA1_c00380 0.18 -0.2 43,401 + PGA1_c00380 0.18 -0.4 43,405 + PGA1_c00380 0.19 -0.1 43,415 + PGA1_c00380 0.20 +1.3 43,418 + PGA1_c00380 0.21 -0.5 43,439 - PGA1_c00380 0.24 +0.7 43,452 + PGA1_c00380 0.26 +0.3 43,458 + PGA1_c00380 0.26 -0.8 43,469 + PGA1_c00380 0.28 -1.7 43,469 + PGA1_c00380 0.28 +0.9 43,469 + PGA1_c00380 0.28 +0.3 43,477 - PGA1_c00380 0.29 +1.7 43,477 - PGA1_c00380 0.29 +0.5
Or see this region's nucleotide sequence