Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3424 and HP15_3425 are separated by 27 nucleotides HP15_3425 and HP15_3426 are separated by 60 nucleotides HP15_3426 and HP15_3427 are separated by 96 nucleotides HP15_3427 and HP15_3428 are separated by 4 nucleotides
HP15_3424: HP15_3424 - membrane protein containing DUF340, prokaryotic membrane, at 3,600,810 to 3,601,718
_3424
HP15_3425: HP15_3425 - conserved hypothetical protein, at 3,601,746 to 3,602,066
_3425
HP15_3426: HP15_3426 - conserved hypothetical protein, at 3,602,127 to 3,602,447
_3426
HP15_3427: HP15_3427 - two-component response regulator, at 3,602,544 to 3,602,945
_3427
HP15_3428: HP15_3428 - response regulator receiver protein, at 3,602,950 to 3,604,098
_3428
Position (kb)
3602
3603 Strain fitness (log2 ratio)
-2
-1
0
1 at 3601.156 kb on + strand, within HP15_3424 at 3601.164 kb on - strand, within HP15_3424 at 3601.186 kb on - strand, within HP15_3424 at 3601.192 kb on + strand, within HP15_3424 at 3601.394 kb on - strand, within HP15_3424 at 3601.423 kb on - strand, within HP15_3424 at 3601.432 kb on + strand, within HP15_3424 at 3601.439 kb on - strand, within HP15_3424 at 3601.439 kb on - strand, within HP15_3424 at 3601.450 kb on + strand, within HP15_3424 at 3601.508 kb on - strand, within HP15_3424 at 3601.585 kb on - strand, within HP15_3424 at 3601.606 kb on - strand, within HP15_3424 at 3601.632 kb on - strand at 3601.632 kb on - strand at 3601.756 kb on + strand at 3601.757 kb on - strand at 3601.764 kb on - strand at 3601.850 kb on - strand, within HP15_3425 at 3601.859 kb on - strand, within HP15_3425 at 3601.929 kb on + strand, within HP15_3425 at 3601.937 kb on - strand, within HP15_3425 at 3601.937 kb on - strand, within HP15_3425 at 3601.951 kb on + strand, within HP15_3425 at 3601.974 kb on + strand, within HP15_3425 at 3601.974 kb on + strand, within HP15_3425 at 3601.982 kb on - strand, within HP15_3425 at 3601.982 kb on - strand, within HP15_3425 at 3601.982 kb on - strand, within HP15_3425 at 3601.984 kb on + strand, within HP15_3425 at 3601.992 kb on - strand, within HP15_3425 at 3602.084 kb on + strand at 3602.092 kb on - strand at 3602.124 kb on - strand at 3602.130 kb on + strand at 3602.130 kb on + strand at 3602.146 kb on + strand at 3602.146 kb on + strand at 3602.149 kb on - strand at 3602.149 kb on - strand at 3602.149 kb on - strand at 3602.154 kb on - strand at 3602.159 kb on - strand, within HP15_3426 at 3602.193 kb on - strand, within HP15_3426 at 3602.209 kb on + strand, within HP15_3426 at 3602.217 kb on - strand, within HP15_3426 at 3602.265 kb on - strand, within HP15_3426 at 3602.332 kb on - strand, within HP15_3426 at 3602.352 kb on - strand, within HP15_3426 at 3602.372 kb on + strand, within HP15_3426 at 3602.481 kb on + strand at 3602.517 kb on + strand at 3602.722 kb on + strand, within HP15_3427 at 3602.730 kb on - strand, within HP15_3427 at 3602.761 kb on - strand, within HP15_3427 at 3602.826 kb on + strand, within HP15_3427 at 3602.852 kb on + strand, within HP15_3427 at 3602.893 kb on - strand, within HP15_3427 at 3602.928 kb on + strand at 3603.009 kb on + strand at 3603.018 kb on + strand at 3603.027 kb on - strand at 3603.037 kb on + strand at 3603.157 kb on + strand, within HP15_3428 at 3603.158 kb on + strand, within HP15_3428 at 3603.165 kb on + strand, within HP15_3428 at 3603.166 kb on - strand, within HP15_3428 at 3603.171 kb on - strand, within HP15_3428 at 3603.202 kb on + strand, within HP15_3428 at 3603.208 kb on - strand, within HP15_3428 at 3603.363 kb on + strand, within HP15_3428 at 3603.367 kb on - strand, within HP15_3428 at 3603.375 kb on + strand, within HP15_3428 at 3603.419 kb on + strand, within HP15_3428 at 3603.444 kb on - strand, within HP15_3428 at 3603.447 kb on + strand, within HP15_3428
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 3,601,156 + HP15_3424 0.38 +0.6 3,601,164 - HP15_3424 0.39 -1.0 3,601,186 - HP15_3424 0.41 -0.1 3,601,192 + HP15_3424 0.42 -1.9 3,601,394 - HP15_3424 0.64 +0.9 3,601,423 - HP15_3424 0.67 -0.3 3,601,432 + HP15_3424 0.68 -0.5 3,601,439 - HP15_3424 0.69 -0.1 3,601,439 - HP15_3424 0.69 -0.1 3,601,450 + HP15_3424 0.70 -0.7 3,601,508 - HP15_3424 0.77 -0.9 3,601,585 - HP15_3424 0.85 -0.2 3,601,606 - HP15_3424 0.88 -0.3 3,601,632 - -0.4 3,601,632 - -0.3 3,601,756 + -0.4 3,601,757 - -0.2 3,601,764 - -0.7 3,601,850 - HP15_3425 0.32 +0.6 3,601,859 - HP15_3425 0.35 -0.9 3,601,929 + HP15_3425 0.57 -0.3 3,601,937 - HP15_3425 0.60 -1.0 3,601,937 - HP15_3425 0.60 -0.7 3,601,951 + HP15_3425 0.64 -1.3 3,601,974 + HP15_3425 0.71 -1.5 3,601,974 + HP15_3425 0.71 -1.2 3,601,982 - HP15_3425 0.74 -0.7 3,601,982 - HP15_3425 0.74 -0.9 3,601,982 - HP15_3425 0.74 -1.5 3,601,984 + HP15_3425 0.74 -0.6 3,601,992 - HP15_3425 0.77 -0.9 3,602,084 + -1.2 3,602,092 - +0.7 3,602,124 - -0.2 3,602,130 + -0.1 3,602,130 + -1.0 3,602,146 + +0.4 3,602,146 + -0.8 3,602,149 - -1.3 3,602,149 - -0.0 3,602,149 - +0.2 3,602,154 - -0.5 3,602,159 - HP15_3426 0.10 -0.4 3,602,193 - HP15_3426 0.21 -1.1 3,602,209 + HP15_3426 0.26 -1.0 3,602,217 - HP15_3426 0.28 -0.5 3,602,265 - HP15_3426 0.43 -0.4 3,602,332 - HP15_3426 0.64 +0.3 3,602,352 - HP15_3426 0.70 -0.7 3,602,372 + HP15_3426 0.76 -0.9 3,602,481 + -0.8 3,602,517 + -0.3 3,602,722 + HP15_3427 0.44 -0.2 3,602,730 - HP15_3427 0.46 +0.3 3,602,761 - HP15_3427 0.54 +0.1 3,602,826 + HP15_3427 0.70 -0.8 3,602,852 + HP15_3427 0.77 +0.5 3,602,893 - HP15_3427 0.87 +0.9 3,602,928 + -0.1 3,603,009 + +0.6 3,603,018 + +0.4 3,603,027 - +0.1 3,603,037 + +0.6 3,603,157 + HP15_3428 0.18 -0.3 3,603,158 + HP15_3428 0.18 -0.5 3,603,165 + HP15_3428 0.19 +0.3 3,603,166 - HP15_3428 0.19 +1.2 3,603,171 - HP15_3428 0.19 -0.6 3,603,202 + HP15_3428 0.22 -0.3 3,603,208 - HP15_3428 0.22 -0.4 3,603,363 + HP15_3428 0.36 +1.0 3,603,367 - HP15_3428 0.36 -0.1 3,603,375 + HP15_3428 0.37 -0.2 3,603,419 + HP15_3428 0.41 +0.6 3,603,444 - HP15_3428 0.43 -0.0 3,603,447 + HP15_3428 0.43 -0.0
Or see this region's nucleotide sequence