Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03200 and PGA1_c03210 are separated by 79 nucleotides PGA1_c03210 and PGA1_c03220 overlap by 4 nucleotides PGA1_c03220 and PGA1_c03230 are separated by 59 nucleotides
PGA1_c03200: PGA1_c03200 - hypothetical protein, at 307,626 to 308,294
_c03200
PGA1_c03210: PGA1_c03210 - branched-chain amino acid transport protein azlD-like protein, at 308,374 to 308,709
_c03210
PGA1_c03220: PGA1_c03220 - branched-chain amino acid transport protein azlC-like protein, at 308,706 to 309,431
_c03220
PGA1_c03230: PGA1_c03230 - putative formate dehydrogenase, subunit FdhD, at 309,491 to 310,393
_c03230
Position (kb) 308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 307.750 kb on - strand, within PGA1_c03200 at 307.843 kb on - strand, within PGA1_c03200 at 307.870 kb on + strand, within PGA1_c03200 at 307.981 kb on + strand, within PGA1_c03200 at 307.989 kb on - strand, within PGA1_c03200 at 308.020 kb on + strand, within PGA1_c03200 at 308.035 kb on - strand, within PGA1_c03200 at 308.054 kb on - strand, within PGA1_c03200 at 308.144 kb on - strand, within PGA1_c03200 at 308.194 kb on - strand, within PGA1_c03200 at 308.198 kb on + strand, within PGA1_c03200 at 308.234 kb on - strand at 308.264 kb on + strand at 308.272 kb on - strand at 308.272 kb on - strand at 308.306 kb on - strand at 308.367 kb on + strand at 308.375 kb on - strand at 308.405 kb on - strand at 308.436 kb on - strand, within PGA1_c03210 at 308.524 kb on + strand, within PGA1_c03210 at 308.527 kb on + strand, within PGA1_c03210 at 308.567 kb on + strand, within PGA1_c03210 at 308.567 kb on - strand, within PGA1_c03210 at 308.575 kb on - strand, within PGA1_c03210 at 308.595 kb on + strand, within PGA1_c03210 at 308.648 kb on - strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.683 kb on - strand at 308.683 kb on - strand at 308.683 kb on - strand at 308.683 kb on - strand at 308.683 kb on - strand at 308.686 kb on + strand at 308.693 kb on - strand at 308.693 kb on - strand at 308.718 kb on - strand at 308.718 kb on - strand at 308.754 kb on - strand at 308.756 kb on + strand at 308.761 kb on - strand at 308.789 kb on - strand, within PGA1_c03220 at 308.803 kb on - strand at 308.816 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.868 kb on - strand, within PGA1_c03220 at 308.879 kb on + strand, within PGA1_c03220 at 308.879 kb on + strand, within PGA1_c03220 at 308.879 kb on + strand, within PGA1_c03220 at 308.887 kb on - strand, within PGA1_c03220 at 308.957 kb on + strand, within PGA1_c03220 at 308.975 kb on - strand, within PGA1_c03220 at 308.981 kb on - strand, within PGA1_c03220 at 309.005 kb on + strand, within PGA1_c03220 at 309.035 kb on + strand, within PGA1_c03220 at 309.035 kb on + strand, within PGA1_c03220 at 309.035 kb on + strand, within PGA1_c03220 at 309.043 kb on - strand, within PGA1_c03220 at 309.068 kb on + strand, within PGA1_c03220 at 309.068 kb on + strand, within PGA1_c03220 at 309.082 kb on + strand, within PGA1_c03220 at 309.090 kb on - strand, within PGA1_c03220 at 309.154 kb on - strand, within PGA1_c03220 at 309.250 kb on + strand, within PGA1_c03220 at 309.258 kb on - strand, within PGA1_c03220 at 309.258 kb on - strand, within PGA1_c03220 at 309.258 kb on - strand, within PGA1_c03220 at 309.268 kb on - strand, within PGA1_c03220 at 309.280 kb on - strand, within PGA1_c03220 at 309.304 kb on + strand, within PGA1_c03220 at 309.306 kb on - strand, within PGA1_c03220 at 309.459 kb on - strand at 309.460 kb on + strand at 309.460 kb on + strand at 309.468 kb on - strand at 309.468 kb on - strand at 309.468 kb on - strand at 309.468 kb on - strand at 309.515 kb on - strand at 309.520 kb on - strand at 309.739 kb on + strand, within PGA1_c03230 at 309.749 kb on + strand, within PGA1_c03230 at 309.782 kb on + strand, within PGA1_c03230 at 309.827 kb on - strand, within PGA1_c03230 at 309.874 kb on - strand, within PGA1_c03230 at 309.927 kb on + strand, within PGA1_c03230 at 309.927 kb on + strand, within PGA1_c03230 at 309.929 kb on + strand, within PGA1_c03230 at 309.929 kb on + strand, within PGA1_c03230 at 309.937 kb on - strand, within PGA1_c03230 at 309.937 kb on - strand, within PGA1_c03230 at 309.937 kb on - strand, within PGA1_c03230 at 309.986 kb on - strand, within PGA1_c03230 at 309.990 kb on + strand, within PGA1_c03230 at 309.990 kb on + strand, within PGA1_c03230 at 309.998 kb on - strand, within PGA1_c03230 at 309.998 kb on - strand, within PGA1_c03230 at 310.026 kb on + strand, within PGA1_c03230 at 310.045 kb on + strand, within PGA1_c03230 at 310.069 kb on + strand, within PGA1_c03230 at 310.153 kb on + strand, within PGA1_c03230 at 310.158 kb on + strand, within PGA1_c03230 at 310.166 kb on - strand, within PGA1_c03230 at 310.299 kb on - strand, within PGA1_c03230 at 310.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 307,750 - PGA1_c03200 0.19 +1.1 307,843 - PGA1_c03200 0.32 -0.8 307,870 + PGA1_c03200 0.36 -0.4 307,981 + PGA1_c03200 0.53 +0.0 307,989 - PGA1_c03200 0.54 +1.9 308,020 + PGA1_c03200 0.59 +0.9 308,035 - PGA1_c03200 0.61 -1.7 308,054 - PGA1_c03200 0.64 +0.3 308,144 - PGA1_c03200 0.77 +0.9 308,194 - PGA1_c03200 0.85 +0.7 308,198 + PGA1_c03200 0.86 +0.4 308,234 - -0.9 308,264 + +0.7 308,272 - +1.0 308,272 - +0.0 308,306 - +0.1 308,367 + -1.3 308,375 - -0.5 308,405 - -1.4 308,436 - PGA1_c03210 0.18 -0.9 308,524 + PGA1_c03210 0.45 -1.5 308,527 + PGA1_c03210 0.46 -0.2 308,567 + PGA1_c03210 0.57 +0.0 308,567 - PGA1_c03210 0.57 -1.1 308,575 - PGA1_c03210 0.60 -1.2 308,595 + PGA1_c03210 0.66 +0.4 308,648 - PGA1_c03210 0.82 -0.2 308,675 + PGA1_c03210 0.90 -0.6 308,675 + PGA1_c03210 0.90 +0.1 308,675 + PGA1_c03210 0.90 +0.8 308,675 + PGA1_c03210 0.90 +0.6 308,675 + PGA1_c03210 0.90 +0.4 308,675 + PGA1_c03210 0.90 +0.4 308,683 - -1.6 308,683 - +0.1 308,683 - +1.1 308,683 - -0.1 308,683 - +0.1 308,686 + -0.5 308,693 - -1.3 308,693 - +0.3 308,718 - +1.2 308,718 - +0.5 308,754 - -3.0 308,756 + -0.3 308,761 - +0.6 308,789 - PGA1_c03220 0.11 +0.7 308,803 - +2.8 308,816 - PGA1_c03220 0.15 -2.7 308,826 - PGA1_c03220 0.17 -0.5 308,826 - PGA1_c03220 0.17 +1.1 308,826 - PGA1_c03220 0.17 +1.5 308,826 - PGA1_c03220 0.17 +0.6 308,826 - PGA1_c03220 0.17 +1.6 308,868 - PGA1_c03220 0.22 -0.6 308,879 + PGA1_c03220 0.24 +0.9 308,879 + PGA1_c03220 0.24 +1.2 308,879 + PGA1_c03220 0.24 -2.7 308,887 - PGA1_c03220 0.25 +0.2 308,957 + PGA1_c03220 0.35 -0.3 308,975 - PGA1_c03220 0.37 -0.3 308,981 - PGA1_c03220 0.38 -0.5 309,005 + PGA1_c03220 0.41 +0.6 309,035 + PGA1_c03220 0.45 -0.2 309,035 + PGA1_c03220 0.45 +0.6 309,035 + PGA1_c03220 0.45 +0.8 309,043 - PGA1_c03220 0.46 +2.2 309,068 + PGA1_c03220 0.50 +0.8 309,068 + PGA1_c03220 0.50 +0.0 309,082 + PGA1_c03220 0.52 -2.5 309,090 - PGA1_c03220 0.53 -0.4 309,154 - PGA1_c03220 0.62 +0.7 309,250 + PGA1_c03220 0.75 -1.6 309,258 - PGA1_c03220 0.76 +0.9 309,258 - PGA1_c03220 0.76 +0.4 309,258 - PGA1_c03220 0.76 -1.2 309,268 - PGA1_c03220 0.77 +0.2 309,280 - PGA1_c03220 0.79 +0.3 309,304 + PGA1_c03220 0.82 +0.5 309,306 - PGA1_c03220 0.83 -0.5 309,459 - +0.1 309,460 + -0.2 309,460 + -0.1 309,468 - +0.0 309,468 - +0.7 309,468 - -0.0 309,468 - +0.7 309,515 - +1.4 309,520 - +0.5 309,739 + PGA1_c03230 0.27 +0.5 309,749 + PGA1_c03230 0.29 -0.0 309,782 + PGA1_c03230 0.32 +0.5 309,827 - PGA1_c03230 0.37 -1.9 309,874 - PGA1_c03230 0.42 -0.3 309,927 + PGA1_c03230 0.48 +0.6 309,927 + PGA1_c03230 0.48 +0.4 309,929 + PGA1_c03230 0.49 +0.5 309,929 + PGA1_c03230 0.49 -0.0 309,937 - PGA1_c03230 0.49 +0.5 309,937 - PGA1_c03230 0.49 +0.4 309,937 - PGA1_c03230 0.49 +0.5 309,986 - PGA1_c03230 0.55 -0.2 309,990 + PGA1_c03230 0.55 -0.1 309,990 + PGA1_c03230 0.55 -0.9 309,998 - PGA1_c03230 0.56 +0.8 309,998 - PGA1_c03230 0.56 +1.0 310,026 + PGA1_c03230 0.59 -0.7 310,045 + PGA1_c03230 0.61 -0.1 310,069 + PGA1_c03230 0.64 -0.0 310,153 + PGA1_c03230 0.73 +0.7 310,158 + PGA1_c03230 0.74 -0.1 310,166 - PGA1_c03230 0.75 +1.3 310,299 - PGA1_c03230 0.89 -1.0 310,348 - -2.4
Or see this region's nucleotide sequence