Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31170 and PGA1_c31180 are separated by 3 nucleotides PGA1_c31180 and PGA1_c31190 are separated by 162 nucleotides PGA1_c31190 and PGA1_c31200 are separated by 70 nucleotides PGA1_c31200 and PGA1_c31210 overlap by 4 nucleotides
PGA1_c31170: PGA1_c31170 - phosphotyrosine protein phosphatase-like protein, at 3,254,355 to 3,254,813
_c31170
PGA1_c31180: PGA1_c31180 - Uncharacterized protein conserved in bacteria, at 3,254,817 to 3,255,296
_c31180
PGA1_c31190: PGA1_c31190 - histidinol dehydrogenase HisD, at 3,255,459 to 3,256,760
_c31190
PGA1_c31200: PGA1_c31200 - putative acetyltransferase, at 3,256,831 to 3,257,373
_c31200
PGA1_c31210: PGA1_c31210 - Protein of unknown function (DUF2948)., at 3,257,370 to 3,257,846
_c31210
Position (kb)
3255
3256
3257 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3254.459 kb on + strand, within PGA1_c31170 at 3254.467 kb on - strand, within PGA1_c31170 at 3254.581 kb on + strand, within PGA1_c31170 at 3254.581 kb on + strand, within PGA1_c31170 at 3254.630 kb on + strand, within PGA1_c31170 at 3254.751 kb on - strand, within PGA1_c31170 at 3254.782 kb on - strand at 3254.956 kb on + strand, within PGA1_c31180 at 3254.956 kb on + strand, within PGA1_c31180 at 3254.956 kb on + strand, within PGA1_c31180 at 3254.980 kb on + strand, within PGA1_c31180 at 3255.017 kb on - strand, within PGA1_c31180 at 3255.040 kb on - strand, within PGA1_c31180 at 3255.056 kb on + strand, within PGA1_c31180 at 3255.063 kb on + strand, within PGA1_c31180 at 3255.104 kb on - strand, within PGA1_c31180 at 3255.184 kb on + strand, within PGA1_c31180 at 3255.298 kb on + strand at 3255.298 kb on + strand at 3255.298 kb on + strand at 3255.306 kb on - strand at 3255.306 kb on - strand at 3255.306 kb on - strand at 3255.331 kb on - strand at 3255.341 kb on - strand at 3255.344 kb on + strand at 3255.367 kb on + strand at 3255.367 kb on + strand at 3255.440 kb on + strand at 3255.451 kb on - strand at 3256.789 kb on - strand at 3256.792 kb on - strand at 3256.803 kb on + strand at 3256.880 kb on + strand at 3256.880 kb on + strand at 3256.880 kb on + strand at 3256.888 kb on - strand, within PGA1_c31200 at 3256.927 kb on + strand, within PGA1_c31200 at 3256.940 kb on + strand, within PGA1_c31200 at 3256.940 kb on - strand, within PGA1_c31200 at 3256.940 kb on - strand, within PGA1_c31200 at 3256.948 kb on - strand, within PGA1_c31200 at 3256.953 kb on + strand, within PGA1_c31200 at 3256.986 kb on + strand, within PGA1_c31200 at 3257.031 kb on + strand, within PGA1_c31200 at 3257.031 kb on + strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.039 kb on - strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.057 kb on + strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.065 kb on - strand, within PGA1_c31200 at 3257.078 kb on + strand, within PGA1_c31200 at 3257.090 kb on + strand, within PGA1_c31200 at 3257.130 kb on + strand, within PGA1_c31200 at 3257.148 kb on - strand, within PGA1_c31200 at 3257.156 kb on + strand, within PGA1_c31200 at 3257.164 kb on - strand, within PGA1_c31200 at 3257.175 kb on + strand, within PGA1_c31200 at 3257.198 kb on + strand, within PGA1_c31200 at 3257.222 kb on - strand, within PGA1_c31200 at 3257.242 kb on - strand, within PGA1_c31200 at 3257.271 kb on + strand, within PGA1_c31200 at 3257.279 kb on - strand, within PGA1_c31200 at 3257.313 kb on - strand, within PGA1_c31200 at 3257.313 kb on - strand, within PGA1_c31200 at 3257.432 kb on + strand, within PGA1_c31210 at 3257.484 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.519 kb on + strand, within PGA1_c31210 at 3257.569 kb on - strand, within PGA1_c31210 at 3257.625 kb on - strand, within PGA1_c31210 at 3257.681 kb on + strand, within PGA1_c31210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 3,254,459 + PGA1_c31170 0.23 -0.9 3,254,467 - PGA1_c31170 0.24 -0.4 3,254,581 + PGA1_c31170 0.49 -0.5 3,254,581 + PGA1_c31170 0.49 -0.2 3,254,630 + PGA1_c31170 0.60 -1.3 3,254,751 - PGA1_c31170 0.86 -0.9 3,254,782 - +0.4 3,254,956 + PGA1_c31180 0.29 +0.4 3,254,956 + PGA1_c31180 0.29 -0.3 3,254,956 + PGA1_c31180 0.29 -0.5 3,254,980 + PGA1_c31180 0.34 +0.6 3,255,017 - PGA1_c31180 0.42 +0.4 3,255,040 - PGA1_c31180 0.46 +0.3 3,255,056 + PGA1_c31180 0.50 +0.4 3,255,063 + PGA1_c31180 0.51 -0.1 3,255,104 - PGA1_c31180 0.60 -1.1 3,255,184 + PGA1_c31180 0.76 +0.6 3,255,298 + +1.3 3,255,298 + +0.6 3,255,298 + +0.9 3,255,306 - +0.2 3,255,306 - +0.2 3,255,306 - +0.6 3,255,331 - +0.4 3,255,341 - +0.5 3,255,344 + -1.1 3,255,367 + +1.0 3,255,367 + -0.0 3,255,440 + -1.1 3,255,451 - +0.8 3,256,789 - +0.1 3,256,792 - +1.0 3,256,803 + -2.1 3,256,880 + +0.3 3,256,880 + +1.3 3,256,880 + +0.8 3,256,888 - PGA1_c31200 0.10 -0.5 3,256,927 + PGA1_c31200 0.18 +1.5 3,256,940 + PGA1_c31200 0.20 +1.3 3,256,940 - PGA1_c31200 0.20 -1.4 3,256,940 - PGA1_c31200 0.20 +0.6 3,256,948 - PGA1_c31200 0.22 -0.2 3,256,953 + PGA1_c31200 0.22 +0.8 3,256,986 + PGA1_c31200 0.29 -0.2 3,257,031 + PGA1_c31200 0.37 +0.4 3,257,031 + PGA1_c31200 0.37 -0.4 3,257,039 - PGA1_c31200 0.38 +0.9 3,257,039 - PGA1_c31200 0.38 -1.9 3,257,039 - PGA1_c31200 0.38 -0.3 3,257,039 - PGA1_c31200 0.38 +0.3 3,257,039 - PGA1_c31200 0.38 -0.9 3,257,039 - PGA1_c31200 0.38 +0.9 3,257,039 - PGA1_c31200 0.38 -0.5 3,257,057 + PGA1_c31200 0.42 -0.2 3,257,057 + PGA1_c31200 0.42 -0.4 3,257,057 + PGA1_c31200 0.42 +0.6 3,257,057 + PGA1_c31200 0.42 -0.7 3,257,057 + PGA1_c31200 0.42 -0.5 3,257,057 + PGA1_c31200 0.42 +0.5 3,257,057 + PGA1_c31200 0.42 -0.4 3,257,057 + PGA1_c31200 0.42 -0.1 3,257,065 - PGA1_c31200 0.43 -0.5 3,257,065 - PGA1_c31200 0.43 +0.9 3,257,065 - PGA1_c31200 0.43 +0.3 3,257,078 + PGA1_c31200 0.45 +0.8 3,257,090 + PGA1_c31200 0.48 -2.5 3,257,130 + PGA1_c31200 0.55 -0.3 3,257,148 - PGA1_c31200 0.58 +0.8 3,257,156 + PGA1_c31200 0.60 +1.0 3,257,164 - PGA1_c31200 0.61 +0.6 3,257,175 + PGA1_c31200 0.63 +0.1 3,257,198 + PGA1_c31200 0.68 +0.2 3,257,222 - PGA1_c31200 0.72 -0.3 3,257,242 - PGA1_c31200 0.76 -1.1 3,257,271 + PGA1_c31200 0.81 +0.0 3,257,279 - PGA1_c31200 0.83 +0.3 3,257,313 - PGA1_c31200 0.89 +0.3 3,257,313 - PGA1_c31200 0.89 +0.4 3,257,432 + PGA1_c31210 0.13 -0.5 3,257,484 + PGA1_c31210 0.24 +0.3 3,257,519 + PGA1_c31210 0.31 -0.1 3,257,519 + PGA1_c31210 0.31 +0.4 3,257,519 + PGA1_c31210 0.31 -0.6 3,257,569 - PGA1_c31210 0.42 +0.1 3,257,625 - PGA1_c31210 0.53 -2.4 3,257,681 + PGA1_c31210 0.65 -3.8
Or see this region's nucleotide sequence