Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30890 and PGA1_c30900 are separated by 2 nucleotides
PGA1_c30890: PGA1_c30890 - putative HipA-like protein, at 3,225,523 to 3,226,749
_c30890
PGA1_c30900: PGA1_c30900 - hypothetical protein, at 3,226,752 to 3,227,063
_c30900
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3225.752 kb on - strand, within PGA1_c30890 at 3225.853 kb on - strand, within PGA1_c30890 at 3225.863 kb on + strand, within PGA1_c30890 at 3225.883 kb on + strand, within PGA1_c30890 at 3225.905 kb on - strand, within PGA1_c30890 at 3226.052 kb on + strand, within PGA1_c30890 at 3226.052 kb on + strand, within PGA1_c30890 at 3226.055 kb on - strand, within PGA1_c30890 at 3226.055 kb on - strand, within PGA1_c30890 at 3226.059 kb on + strand, within PGA1_c30890 at 3226.062 kb on + strand, within PGA1_c30890 at 3226.067 kb on + strand, within PGA1_c30890 at 3226.067 kb on + strand, within PGA1_c30890 at 3226.075 kb on - strand, within PGA1_c30890 at 3226.119 kb on - strand, within PGA1_c30890 at 3226.178 kb on - strand, within PGA1_c30890 at 3226.299 kb on + strand, within PGA1_c30890 at 3226.312 kb on + strand, within PGA1_c30890 at 3226.320 kb on - strand, within PGA1_c30890 at 3226.347 kb on + strand, within PGA1_c30890 at 3226.383 kb on + strand, within PGA1_c30890 at 3226.389 kb on - strand, within PGA1_c30890 at 3226.391 kb on + strand, within PGA1_c30890 at 3226.399 kb on - strand, within PGA1_c30890 at 3226.403 kb on - strand, within PGA1_c30890 at 3226.414 kb on - strand, within PGA1_c30890 at 3226.429 kb on + strand, within PGA1_c30890 at 3226.503 kb on + strand, within PGA1_c30890 at 3226.528 kb on + strand, within PGA1_c30890 at 3226.543 kb on - strand, within PGA1_c30890 at 3226.544 kb on - strand, within PGA1_c30890 at 3226.592 kb on + strand, within PGA1_c30890 at 3226.600 kb on - strand, within PGA1_c30890 at 3226.600 kb on - strand, within PGA1_c30890 at 3226.649 kb on - strand at 3226.684 kb on + strand at 3226.689 kb on + strand at 3226.751 kb on + strand at 3226.828 kb on + strand, within PGA1_c30900 at 3226.836 kb on - strand, within PGA1_c30900 at 3226.850 kb on - strand, within PGA1_c30900 at 3226.930 kb on - strand, within PGA1_c30900 at 3226.930 kb on - strand, within PGA1_c30900 at 3226.942 kb on + strand, within PGA1_c30900 at 3226.965 kb on + strand, within PGA1_c30900 at 3226.976 kb on + strand, within PGA1_c30900 at 3227.051 kb on + strand at 3227.051 kb on + strand at 3227.059 kb on - strand at 3227.059 kb on - strand at 3227.059 kb on - strand at 3227.161 kb on + strand at 3227.199 kb on - strand at 3227.213 kb on - strand at 3227.228 kb on + strand at 3227.228 kb on + strand at 3227.235 kb on + strand at 3227.236 kb on - strand at 3227.243 kb on - strand at 3227.243 kb on - strand at 3227.248 kb on - strand at 3227.248 kb on - strand at 3227.288 kb on + strand at 3227.288 kb on + strand at 3227.288 kb on + strand at 3227.288 kb on + strand at 3227.290 kb on + strand at 3227.294 kb on - strand at 3227.294 kb on - strand at 3227.294 kb on - strand at 3227.294 kb on - strand at 3227.315 kb on - strand at 3227.353 kb on + strand at 3227.397 kb on - strand at 3227.400 kb on + strand at 3227.408 kb on - strand at 3227.475 kb on + strand at 3227.483 kb on - strand at 3227.483 kb on - strand at 3227.483 kb on - strand at 3227.485 kb on + strand at 3227.493 kb on - strand at 3227.497 kb on - strand at 3227.502 kb on - strand at 3227.504 kb on + strand at 3227.517 kb on + strand at 3227.520 kb on + strand at 3227.520 kb on - strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.528 kb on - strand at 3227.530 kb on - strand at 3227.537 kb on + strand at 3227.577 kb on + strand at 3227.589 kb on + strand at 3227.603 kb on - strand at 3227.682 kb on + strand at 3227.685 kb on - strand at 3227.696 kb on - strand at 3227.703 kb on + strand at 3227.717 kb on - strand at 3227.758 kb on + strand at 3227.763 kb on + strand at 3227.783 kb on + strand at 3227.798 kb on - strand at 3227.812 kb on - strand at 3227.817 kb on - strand at 3227.820 kb on + strand at 3227.836 kb on + strand at 3227.853 kb on + strand at 3227.917 kb on - strand at 3227.924 kb on - strand at 3227.926 kb on + strand at 3227.975 kb on + strand at 3228.002 kb on + strand at 3228.006 kb on + strand at 3228.025 kb on - strand at 3228.030 kb on + strand at 3228.030 kb on + strand at 3228.032 kb on - strand at 3228.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 3,225,752 - PGA1_c30890 0.19 +0.8 3,225,853 - PGA1_c30890 0.27 -0.2 3,225,863 + PGA1_c30890 0.28 -0.1 3,225,883 + PGA1_c30890 0.29 +0.7 3,225,905 - PGA1_c30890 0.31 +0.2 3,226,052 + PGA1_c30890 0.43 -2.0 3,226,052 + PGA1_c30890 0.43 -1.8 3,226,055 - PGA1_c30890 0.43 -0.3 3,226,055 - PGA1_c30890 0.43 +0.8 3,226,059 + PGA1_c30890 0.44 -0.8 3,226,062 + PGA1_c30890 0.44 +0.1 3,226,067 + PGA1_c30890 0.44 +0.7 3,226,067 + PGA1_c30890 0.44 -0.0 3,226,075 - PGA1_c30890 0.45 -0.5 3,226,119 - PGA1_c30890 0.49 +0.7 3,226,178 - PGA1_c30890 0.53 -0.3 3,226,299 + PGA1_c30890 0.63 +0.2 3,226,312 + PGA1_c30890 0.64 +0.1 3,226,320 - PGA1_c30890 0.65 -0.0 3,226,347 + PGA1_c30890 0.67 +0.2 3,226,383 + PGA1_c30890 0.70 -0.3 3,226,389 - PGA1_c30890 0.71 +0.3 3,226,391 + PGA1_c30890 0.71 +0.5 3,226,399 - PGA1_c30890 0.71 -0.6 3,226,403 - PGA1_c30890 0.72 +0.5 3,226,414 - PGA1_c30890 0.73 +1.4 3,226,429 + PGA1_c30890 0.74 -0.9 3,226,503 + PGA1_c30890 0.80 -0.6 3,226,528 + PGA1_c30890 0.82 -0.0 3,226,543 - PGA1_c30890 0.83 -1.3 3,226,544 - PGA1_c30890 0.83 -0.4 3,226,592 + PGA1_c30890 0.87 -0.2 3,226,600 - PGA1_c30890 0.88 +0.4 3,226,600 - PGA1_c30890 0.88 +0.5 3,226,649 - -0.3 3,226,684 + +0.2 3,226,689 + +0.8 3,226,751 + +0.9 3,226,828 + PGA1_c30900 0.24 -0.7 3,226,836 - PGA1_c30900 0.27 +1.2 3,226,850 - PGA1_c30900 0.31 +1.3 3,226,930 - PGA1_c30900 0.57 -1.0 3,226,930 - PGA1_c30900 0.57 +2.3 3,226,942 + PGA1_c30900 0.61 -0.6 3,226,965 + PGA1_c30900 0.68 -0.4 3,226,976 + PGA1_c30900 0.72 +0.8 3,227,051 + +0.6 3,227,051 + +0.3 3,227,059 - -0.7 3,227,059 - +0.8 3,227,059 - -0.6 3,227,161 + +0.1 3,227,199 - +0.1 3,227,213 - -0.1 3,227,228 + -0.6 3,227,228 + +0.2 3,227,235 + -1.0 3,227,236 - -0.0 3,227,243 - +1.1 3,227,243 - -0.8 3,227,248 - -0.6 3,227,248 - +0.0 3,227,288 + +0.1 3,227,288 + +0.5 3,227,288 + -1.0 3,227,288 + -0.8 3,227,290 + -0.3 3,227,294 - -0.0 3,227,294 - -0.4 3,227,294 - +0.8 3,227,294 - +1.1 3,227,315 - -0.3 3,227,353 + +0.2 3,227,397 - -0.4 3,227,400 + +0.9 3,227,408 - +0.6 3,227,475 + +0.5 3,227,483 - -0.2 3,227,483 - +0.5 3,227,483 - -1.6 3,227,485 + +0.5 3,227,493 - -0.1 3,227,497 - +1.9 3,227,502 - +0.0 3,227,504 + -0.6 3,227,517 + -2.0 3,227,520 + +0.2 3,227,520 - +0.6 3,227,522 + -1.1 3,227,522 + -0.0 3,227,522 + -0.3 3,227,522 + +1.2 3,227,522 + -0.8 3,227,522 + -1.7 3,227,522 + +1.6 3,227,528 - -1.0 3,227,530 - +0.4 3,227,537 + -0.2 3,227,577 + -1.2 3,227,589 + -1.0 3,227,603 - +0.3 3,227,682 + +0.0 3,227,685 - +0.3 3,227,696 - -0.0 3,227,703 + +2.1 3,227,717 - +0.5 3,227,758 + +0.6 3,227,763 + +1.1 3,227,783 + +0.9 3,227,798 - -0.1 3,227,812 - +0.5 3,227,817 - +0.2 3,227,820 + -1.3 3,227,836 + -0.6 3,227,853 + -1.5 3,227,917 - -0.1 3,227,924 - -0.2 3,227,926 + -0.2 3,227,975 + +1.2 3,228,002 + +1.3 3,228,006 + -0.1 3,228,025 - -0.1 3,228,030 + +0.1 3,228,030 + -0.6 3,228,032 - +0.2 3,228,040 + -0.4
Or see this region's nucleotide sequence