Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03160

Experiment: m.b. Cephalothin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03150 and PGA1_c03160 overlap by 4 nucleotidesPGA1_c03160 and PGA1_c03170 are separated by 24 nucleotidesPGA1_c03170 and PGA1_c03180 are separated by 82 nucleotides PGA1_c03150: PGA1_c03150 - putative acyl-CoA dehydrogenase, at 303,597 to 305,303 _c03150 PGA1_c03160: PGA1_c03160 - metallo-beta-lactamase-like protein, at 305,300 to 306,337 _c03160 PGA1_c03170: PGA1_c03170 - hypothetical protein, at 306,362 to 306,826 _c03170 PGA1_c03180: PGA1_c03180 - hypothetical protein, at 306,909 to 307,394 _c03180 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1at 304.341 kb on - strand, within PGA1_c03150at 304.348 kb on + strand, within PGA1_c03150at 304.356 kb on - strand, within PGA1_c03150at 304.358 kb on + strand, within PGA1_c03150at 304.373 kb on - strand, within PGA1_c03150at 304.373 kb on - strand, within PGA1_c03150at 304.441 kb on - strand, within PGA1_c03150at 304.449 kb on - strand, within PGA1_c03150at 304.485 kb on - strand, within PGA1_c03150at 304.526 kb on - strand, within PGA1_c03150at 304.526 kb on - strand, within PGA1_c03150at 304.530 kb on + strand, within PGA1_c03150at 304.540 kb on + strand, within PGA1_c03150at 304.613 kb on + strand, within PGA1_c03150at 304.613 kb on + strand, within PGA1_c03150at 304.627 kb on - strand, within PGA1_c03150at 304.653 kb on + strand, within PGA1_c03150at 304.661 kb on - strand, within PGA1_c03150at 304.703 kb on + strand, within PGA1_c03150at 304.703 kb on + strand, within PGA1_c03150at 304.708 kb on + strand, within PGA1_c03150at 304.754 kb on - strand, within PGA1_c03150at 304.786 kb on + strand, within PGA1_c03150at 304.794 kb on - strand, within PGA1_c03150at 304.838 kb on + strand, within PGA1_c03150at 304.851 kb on - strand, within PGA1_c03150at 304.885 kb on + strand, within PGA1_c03150at 304.899 kb on + strand, within PGA1_c03150at 304.992 kb on + strand, within PGA1_c03150at 304.995 kb on - strand, within PGA1_c03150at 305.255 kb on - strandat 305.284 kb on - strandat 305.284 kb on - strandat 305.347 kb on + strandat 305.422 kb on + strand, within PGA1_c03160at 305.422 kb on + strand, within PGA1_c03160at 305.430 kb on - strand, within PGA1_c03160at 305.430 kb on - strand, within PGA1_c03160at 305.430 kb on - strand, within PGA1_c03160at 305.464 kb on - strand, within PGA1_c03160at 305.466 kb on - strand, within PGA1_c03160at 305.472 kb on - strand, within PGA1_c03160at 305.480 kb on + strand, within PGA1_c03160at 305.512 kb on + strand, within PGA1_c03160at 305.618 kb on - strand, within PGA1_c03160at 305.625 kb on - strand, within PGA1_c03160at 305.636 kb on + strand, within PGA1_c03160at 305.642 kb on - strand, within PGA1_c03160at 305.644 kb on - strand, within PGA1_c03160at 305.677 kb on + strand, within PGA1_c03160at 305.792 kb on - strand, within PGA1_c03160at 305.851 kb on + strand, within PGA1_c03160at 305.877 kb on + strand, within PGA1_c03160at 305.891 kb on + strand, within PGA1_c03160at 305.923 kb on - strand, within PGA1_c03160at 306.014 kb on - strand, within PGA1_c03160at 306.037 kb on + strand, within PGA1_c03160at 306.047 kb on + strand, within PGA1_c03160at 306.073 kb on - strand, within PGA1_c03160at 306.099 kb on + strand, within PGA1_c03160at 306.163 kb on + strand, within PGA1_c03160at 306.233 kb on + strand, within PGA1_c03160at 306.238 kb on + strandat 306.285 kb on - strandat 306.325 kb on + strandat 306.332 kb on + strandat 306.358 kb on + strandat 306.358 kb on + strandat 306.371 kb on - strandat 306.395 kb on + strandat 306.407 kb on + strandat 306.415 kb on - strand, within PGA1_c03170at 306.425 kb on - strand, within PGA1_c03170at 306.425 kb on - strand, within PGA1_c03170at 306.436 kb on - strand, within PGA1_c03170at 306.516 kb on + strand, within PGA1_c03170at 306.524 kb on - strand, within PGA1_c03170at 306.570 kb on - strand, within PGA1_c03170at 306.584 kb on + strand, within PGA1_c03170at 306.592 kb on - strand, within PGA1_c03170at 306.676 kb on + strand, within PGA1_c03170at 306.684 kb on - strand, within PGA1_c03170at 306.832 kb on + strandat 306.837 kb on + strandat 306.900 kb on + strandat 307.016 kb on - strand, within PGA1_c03180at 307.026 kb on - strand, within PGA1_c03180at 307.039 kb on + strand, within PGA1_c03180at 307.093 kb on + strand, within PGA1_c03180at 307.145 kb on + strand, within PGA1_c03180at 307.335 kb on + strand, within PGA1_c03180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
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304,341 - PGA1_c03150 0.44 +0.3
304,348 + PGA1_c03150 0.44 -0.6
304,356 - PGA1_c03150 0.44 -0.2
304,358 + PGA1_c03150 0.45 +0.5
304,373 - PGA1_c03150 0.45 +1.1
304,373 - PGA1_c03150 0.45 -1.3
304,441 - PGA1_c03150 0.49 -0.3
304,449 - PGA1_c03150 0.50 +1.0
304,485 - PGA1_c03150 0.52 -0.2
304,526 - PGA1_c03150 0.54 -2.2
304,526 - PGA1_c03150 0.54 +0.3
304,530 + PGA1_c03150 0.55 +0.5
304,540 + PGA1_c03150 0.55 +0.1
304,613 + PGA1_c03150 0.60 +0.4
304,613 + PGA1_c03150 0.60 -0.1
304,627 - PGA1_c03150 0.60 +1.0
304,653 + PGA1_c03150 0.62 -0.2
304,661 - PGA1_c03150 0.62 -2.4
304,703 + PGA1_c03150 0.65 +0.5
304,703 + PGA1_c03150 0.65 -0.2
304,708 + PGA1_c03150 0.65 +0.7
304,754 - PGA1_c03150 0.68 +0.2
304,786 + PGA1_c03150 0.70 +0.1
304,794 - PGA1_c03150 0.70 +0.6
304,838 + PGA1_c03150 0.73 +0.1
304,851 - PGA1_c03150 0.73 -1.6
304,885 + PGA1_c03150 0.75 +0.7
304,899 + PGA1_c03150 0.76 -0.2
304,992 + PGA1_c03150 0.82 +0.2
304,995 - PGA1_c03150 0.82 -0.4
305,255 - -0.3
305,284 - -1.2
305,284 - +0.4
305,347 + -0.0
305,422 + PGA1_c03160 0.12 -0.6
305,422 + PGA1_c03160 0.12 -0.1
305,430 - PGA1_c03160 0.13 -1.3
305,430 - PGA1_c03160 0.13 +0.4
305,430 - PGA1_c03160 0.13 -1.6
305,464 - PGA1_c03160 0.16 -0.1
305,466 - PGA1_c03160 0.16 +0.7
305,472 - PGA1_c03160 0.17 -0.7
305,480 + PGA1_c03160 0.17 -0.6
305,512 + PGA1_c03160 0.20 +1.0
305,618 - PGA1_c03160 0.31 -0.8
305,625 - PGA1_c03160 0.31 -1.2
305,636 + PGA1_c03160 0.32 -0.0
305,642 - PGA1_c03160 0.33 -0.6
305,644 - PGA1_c03160 0.33 -0.7
305,677 + PGA1_c03160 0.36 -0.1
305,792 - PGA1_c03160 0.47 -1.4
305,851 + PGA1_c03160 0.53 -0.1
305,877 + PGA1_c03160 0.56 +0.3
305,891 + PGA1_c03160 0.57 -0.1
305,923 - PGA1_c03160 0.60 -1.4
306,014 - PGA1_c03160 0.69 -1.1
306,037 + PGA1_c03160 0.71 -0.1
306,047 + PGA1_c03160 0.72 -0.4
306,073 - PGA1_c03160 0.74 -0.5
306,099 + PGA1_c03160 0.77 -0.7
306,163 + PGA1_c03160 0.83 +0.6
306,233 + PGA1_c03160 0.90 +0.5
306,238 + -1.6
306,285 - +0.2
306,325 + -1.6
306,332 + +0.4
306,358 + +0.5
306,358 + +1.7
306,371 - +0.6
306,395 + -0.3
306,407 + +0.5
306,415 - PGA1_c03170 0.11 +0.2
306,425 - PGA1_c03170 0.14 -2.1
306,425 - PGA1_c03170 0.14 -0.3
306,436 - PGA1_c03170 0.16 -0.3
306,516 + PGA1_c03170 0.33 +0.5
306,524 - PGA1_c03170 0.35 -0.2
306,570 - PGA1_c03170 0.45 -1.8
306,584 + PGA1_c03170 0.48 +0.4
306,592 - PGA1_c03170 0.49 -1.4
306,676 + PGA1_c03170 0.68 -0.1
306,684 - PGA1_c03170 0.69 -0.3
306,832 + -0.6
306,837 + +0.5
306,900 + +0.5
307,016 - PGA1_c03180 0.22 +0.8
307,026 - PGA1_c03180 0.24 -0.8
307,039 + PGA1_c03180 0.27 -0.3
307,093 + PGA1_c03180 0.38 -0.9
307,145 + PGA1_c03180 0.49 +0.2
307,335 + PGA1_c03180 0.88 -1.7

Or see this region's nucleotide sequence