Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29860 and PGA1_c29870 are separated by 256 nucleotides PGA1_c29870 and PGA1_c29880 overlap by 4 nucleotides PGA1_c29880 and PGA1_c29890 are separated by 3 nucleotides
PGA1_c29860: PGA1_c29860 - hypothetical protein, at 3,122,523 to 3,123,185
_c29860
PGA1_c29870: PGA1_c29870 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) , at 3,123,442 to 3,124,134
_c29870
PGA1_c29880: PGA1_c29880 - putative tRNA synthetase, at 3,124,131 to 3,125,219
_c29880
PGA1_c29890: PGA1_c29890 - histidyl-tRNA synthetase HisS, at 3,125,223 to 3,126,710
_c29890
Position (kb)
3124
3125
3126 Strain fitness (log2 ratio)
-1
0
1 at 3123.135 kb on - strand at 3123.150 kb on - strand at 3123.169 kb on + strand at 3123.221 kb on - strand at 3123.242 kb on + strand at 3123.242 kb on + strand at 3123.250 kb on - strand at 3123.250 kb on - strand at 3123.250 kb on - strand at 3123.250 kb on - strand at 3123.250 kb on - strand at 3123.252 kb on + strand at 3123.252 kb on + strand at 3123.252 kb on + strand at 3123.260 kb on - strand at 3123.260 kb on - strand at 3123.265 kb on - strand at 3123.331 kb on - strand at 3123.333 kb on - strand at 3123.377 kb on + strand at 3123.385 kb on - strand at 3123.400 kb on - strand at 3123.411 kb on - strand at 3123.440 kb on + strand at 3123.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 3,123,135 - +0.2 3,123,150 - +0.3 3,123,169 + -0.9 3,123,221 - +0.2 3,123,242 + -0.1 3,123,242 + -1.1 3,123,250 - -0.2 3,123,250 - -0.5 3,123,250 - +0.6 3,123,250 - -0.3 3,123,250 - -0.1 3,123,252 + -0.6 3,123,252 + -0.9 3,123,252 + -0.4 3,123,260 - -1.3 3,123,260 - +0.4 3,123,265 - -1.0 3,123,331 - -0.4 3,123,333 - -1.4 3,123,377 + +1.0 3,123,385 - -1.0 3,123,400 - -1.3 3,123,411 - -0.0 3,123,440 + +0.1 3,123,467 - -0.7
Or see this region's nucleotide sequence