Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides PGA1_c03050 and PGA1_c03060 are separated by 3 nucleotides PGA1_c03060 and PGA1_c03070 are separated by 106 nucleotides PGA1_c03070 and PGA1_c03080 are separated by 76 nucleotides
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799
_c03060
PGA1_c03070: PGA1_c03070 - putative uracil DNA glycosylase, at 293,906 to 294,667
_c03070
PGA1_c03080: PGA1_c03080 - molybdenum cofactor biosynthesis protein B, at 294,744 to 295,286
_c03080
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand at 292.330 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.335 kb on + strand, within PGA1_c03050 at 292.338 kb on - strand, within PGA1_c03050 at 292.343 kb on - strand, within PGA1_c03050 at 292.365 kb on - strand, within PGA1_c03050 at 292.408 kb on + strand, within PGA1_c03050 at 292.416 kb on - strand, within PGA1_c03050 at 292.425 kb on + strand, within PGA1_c03050 at 292.426 kb on - strand, within PGA1_c03050 at 292.552 kb on + strand, within PGA1_c03050 at 292.602 kb on + strand, within PGA1_c03050 at 292.610 kb on - strand, within PGA1_c03050 at 292.653 kb on - strand, within PGA1_c03050 at 292.763 kb on - strand at 292.887 kb on + strand at 292.898 kb on + strand at 292.898 kb on + strand at 293.003 kb on + strand, within PGA1_c03060 at 293.191 kb on - strand, within PGA1_c03060 at 293.259 kb on + strand, within PGA1_c03060 at 293.259 kb on + strand, within PGA1_c03060 at 293.261 kb on + strand, within PGA1_c03060 at 293.272 kb on + strand, within PGA1_c03060 at 293.280 kb on - strand, within PGA1_c03060 at 293.350 kb on + strand, within PGA1_c03060 at 293.363 kb on - strand, within PGA1_c03060 at 293.419 kb on + strand, within PGA1_c03060 at 293.500 kb on - strand, within PGA1_c03060 at 293.535 kb on - strand, within PGA1_c03060 at 293.553 kb on - strand, within PGA1_c03060 at 293.623 kb on + strand, within PGA1_c03060 at 293.637 kb on - strand, within PGA1_c03060 at 293.641 kb on - strand, within PGA1_c03060 at 293.641 kb on - strand, within PGA1_c03060 at 293.643 kb on + strand, within PGA1_c03060 at 293.651 kb on - strand, within PGA1_c03060 at 293.676 kb on + strand, within PGA1_c03060 at 293.676 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.679 kb on + strand, within PGA1_c03060 at 293.684 kb on - strand, within PGA1_c03060 at 293.687 kb on - strand, within PGA1_c03060 at 293.790 kb on - strand at 293.794 kb on + strand at 293.797 kb on - strand at 293.806 kb on + strand at 293.825 kb on + strand at 293.825 kb on + strand at 293.825 kb on + strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.836 kb on + strand at 293.836 kb on + strand at 293.836 kb on + strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.858 kb on + strand at 293.879 kb on - strand at 293.882 kb on + strand at 293.892 kb on + strand at 294.640 kb on + strand at 294.648 kb on - strand at 294.648 kb on - strand at 294.729 kb on - strand at 294.734 kb on + strand at 294.742 kb on - strand at 294.742 kb on - strand at 294.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 291,806 - PGA1_c03030 0.90 +0.5 291,825 + -1.3 291,851 + -0.7 291,851 + +0.8 291,851 + +0.0 291,856 + -3.2 291,856 + -0.1 291,856 + +0.7 291,856 + +0.2 291,856 + -0.5 291,856 + +0.2 291,859 - -0.4 291,859 - +1.1 291,863 + +0.6 291,864 - -2.7 291,864 - -0.4 291,864 - +0.9 291,864 - +0.1 291,864 - +0.6 291,864 - -0.2 291,864 - +1.4 291,864 - -0.8 291,864 - +1.0 291,864 - +0.6 291,893 + +1.2 291,898 + PGA1_c03040 0.10 +0.2 291,898 + PGA1_c03040 0.10 -0.8 291,906 - PGA1_c03040 0.12 -0.2 291,918 - PGA1_c03040 0.16 +1.7 291,924 + PGA1_c03040 0.17 -0.3 291,932 + PGA1_c03040 0.19 +0.8 291,940 - PGA1_c03040 0.21 -0.5 291,963 - PGA1_c03040 0.27 +0.8 291,968 - PGA1_c03040 0.29 +0.4 292,007 - PGA1_c03040 0.39 +0.2 292,063 + PGA1_c03040 0.53 +0.7 292,093 - PGA1_c03040 0.61 +1.1 292,093 - PGA1_c03040 0.61 -0.2 292,117 + PGA1_c03040 0.67 -0.0 292,117 + PGA1_c03040 0.67 +0.4 292,183 + PGA1_c03040 0.85 +0.1 292,214 + -1.2 292,239 - +1.0 292,273 + +1.0 292,276 - -0.2 292,276 - -1.2 292,330 + PGA1_c03050 0.16 +1.1 292,335 + PGA1_c03050 0.16 -0.4 292,335 + PGA1_c03050 0.16 -0.8 292,335 + PGA1_c03050 0.16 +1.7 292,338 - PGA1_c03050 0.17 +0.3 292,343 - PGA1_c03050 0.18 -1.7 292,365 - PGA1_c03050 0.22 +0.8 292,408 + PGA1_c03050 0.30 +0.1 292,416 - PGA1_c03050 0.31 +0.5 292,425 + PGA1_c03050 0.33 -0.1 292,426 - PGA1_c03050 0.33 +0.1 292,552 + PGA1_c03050 0.55 +0.9 292,602 + PGA1_c03050 0.64 +0.0 292,610 - PGA1_c03050 0.66 -0.8 292,653 - PGA1_c03050 0.73 +0.1 292,763 - +1.6 292,887 + -0.0 292,898 + +2.4 292,898 + +0.8 293,003 + PGA1_c03060 0.20 -0.4 293,191 - PGA1_c03060 0.39 -0.1 293,259 + PGA1_c03060 0.46 -0.1 293,259 + PGA1_c03060 0.46 -0.8 293,261 + PGA1_c03060 0.46 +0.4 293,272 + PGA1_c03060 0.47 +0.3 293,280 - PGA1_c03060 0.48 +0.8 293,350 + PGA1_c03060 0.55 +0.5 293,363 - PGA1_c03060 0.56 -1.7 293,419 + PGA1_c03060 0.62 +0.2 293,500 - PGA1_c03060 0.70 +0.4 293,535 - PGA1_c03060 0.73 +0.3 293,553 - PGA1_c03060 0.75 +1.2 293,623 + PGA1_c03060 0.82 +0.6 293,637 - PGA1_c03060 0.84 +0.7 293,641 - PGA1_c03060 0.84 -0.1 293,641 - PGA1_c03060 0.84 +0.0 293,643 + PGA1_c03060 0.84 +0.2 293,651 - PGA1_c03060 0.85 +0.8 293,676 + PGA1_c03060 0.88 +1.6 293,676 + PGA1_c03060 0.88 +0.3 293,679 + PGA1_c03060 0.88 -0.6 293,679 + PGA1_c03060 0.88 +0.9 293,679 + PGA1_c03060 0.88 +0.1 293,679 + PGA1_c03060 0.88 +2.3 293,679 + PGA1_c03060 0.88 +0.6 293,684 - PGA1_c03060 0.88 -2.4 293,687 - PGA1_c03060 0.89 +0.3 293,790 - +0.5 293,794 + -0.9 293,797 - -2.4 293,806 + +0.8 293,825 + -1.1 293,825 + +0.0 293,825 + +0.4 293,832 - -0.1 293,832 - +0.7 293,832 - +0.9 293,832 - +1.2 293,832 - +0.0 293,836 + -0.5 293,836 + -0.5 293,836 + -2.0 293,844 - +0.5 293,844 - +0.1 293,844 - -0.2 293,844 - -1.1 293,858 + -0.7 293,879 - -2.0 293,882 + +0.5 293,892 + -0.1 294,640 + -1.0 294,648 - +1.1 294,648 - -0.6 294,729 - -1.0 294,734 + -1.7 294,742 - -0.3 294,742 - +0.1 294,753 + +0.5
Or see this region's nucleotide sequence