Strain Fitness in Marinobacter adhaerens HP15 around HP15_2720

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2719 and HP15_2720 are separated by 58 nucleotidesHP15_2720 and HP15_2721 are separated by 152 nucleotides HP15_2719: HP15_2719 - transmembrane efflux protein, at 2,872,383 to 2,873,555 _2719 HP15_2720: HP15_2720 - protein-tyrosine phosphatase-like protein, at 2,873,614 to 2,874,126 _2720 HP15_2721: HP15_2721 - ribosome-associated GTPase, at 2,874,279 to 2,875,328 _2721 Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -1 0 1at 2872.621 kb on + strand, within HP15_2719at 2872.757 kb on + strand, within HP15_2719at 2872.802 kb on + strand, within HP15_2719at 2872.802 kb on + strand, within HP15_2719at 2872.867 kb on - strand, within HP15_2719at 2872.903 kb on - strand, within HP15_2719at 2872.960 kb on + strand, within HP15_2719at 2872.969 kb on - strand, within HP15_2719at 2873.000 kb on + strand, within HP15_2719at 2873.111 kb on + strand, within HP15_2719at 2873.119 kb on - strand, within HP15_2719at 2873.123 kb on + strand, within HP15_2719at 2873.167 kb on + strand, within HP15_2719at 2873.167 kb on + strand, within HP15_2719at 2873.168 kb on + strand, within HP15_2719at 2873.177 kb on + strand, within HP15_2719at 2873.179 kb on + strand, within HP15_2719at 2873.179 kb on + strand, within HP15_2719at 2873.187 kb on - strand, within HP15_2719at 2873.206 kb on + strand, within HP15_2719at 2873.318 kb on + strand, within HP15_2719at 2873.318 kb on + strand, within HP15_2719at 2873.326 kb on - strand, within HP15_2719at 2873.326 kb on - strand, within HP15_2719at 2873.326 kb on - strand, within HP15_2719at 2873.326 kb on - strand, within HP15_2719at 2873.362 kb on - strand, within HP15_2719at 2873.459 kb on - strandat 2873.521 kb on - strandat 2873.534 kb on + strandat 2873.591 kb on + strandat 2873.778 kb on - strand, within HP15_2720at 2873.779 kb on - strand, within HP15_2720at 2873.839 kb on - strand, within HP15_2720at 2873.841 kb on + strand, within HP15_2720at 2873.877 kb on - strand, within HP15_2720at 2873.949 kb on + strand, within HP15_2720at 2873.954 kb on + strand, within HP15_2720at 2873.954 kb on + strand, within HP15_2720at 2873.954 kb on + strand, within HP15_2720at 2874.076 kb on + strandat 2874.076 kb on + strandat 2874.079 kb on - strandat 2874.087 kb on + strandat 2874.095 kb on - strandat 2874.264 kb on + strandat 2874.546 kb on + strand, within HP15_2721at 2874.637 kb on - strand, within HP15_2721at 2874.682 kb on + strand, within HP15_2721at 2874.712 kb on + strand, within HP15_2721at 2874.762 kb on - strand, within HP15_2721at 2874.800 kb on + strand, within HP15_2721at 2874.836 kb on + strand, within HP15_2721at 2874.943 kb on - strand, within HP15_2721at 2874.998 kb on + strand, within HP15_2721at 2875.054 kb on - strand, within HP15_2721at 2875.120 kb on - strand, within HP15_2721

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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2,872,621 + HP15_2719 0.20 -0.1
2,872,757 + HP15_2719 0.32 -0.1
2,872,802 + HP15_2719 0.36 -0.2
2,872,802 + HP15_2719 0.36 -0.5
2,872,867 - HP15_2719 0.41 -0.6
2,872,903 - HP15_2719 0.44 -0.7
2,872,960 + HP15_2719 0.49 +0.5
2,872,969 - HP15_2719 0.50 +0.2
2,873,000 + HP15_2719 0.53 +0.2
2,873,111 + HP15_2719 0.62 -0.0
2,873,119 - HP15_2719 0.63 -0.7
2,873,123 + HP15_2719 0.63 -0.3
2,873,167 + HP15_2719 0.67 +0.4
2,873,167 + HP15_2719 0.67 -0.3
2,873,168 + HP15_2719 0.67 +0.8
2,873,177 + HP15_2719 0.68 +0.0
2,873,179 + HP15_2719 0.68 -0.3
2,873,179 + HP15_2719 0.68 +0.3
2,873,187 - HP15_2719 0.69 +0.1
2,873,206 + HP15_2719 0.70 -0.0
2,873,318 + HP15_2719 0.80 -0.1
2,873,318 + HP15_2719 0.80 +0.2
2,873,326 - HP15_2719 0.80 +0.0
2,873,326 - HP15_2719 0.80 +0.2
2,873,326 - HP15_2719 0.80 +0.1
2,873,326 - HP15_2719 0.80 +0.1
2,873,362 - HP15_2719 0.83 +0.2
2,873,459 - -0.1
2,873,521 - +0.2
2,873,534 + +0.6
2,873,591 + -0.3
2,873,778 - HP15_2720 0.32 -1.1
2,873,779 - HP15_2720 0.32 +0.3
2,873,839 - HP15_2720 0.44 -0.6
2,873,841 + HP15_2720 0.44 -0.4
2,873,877 - HP15_2720 0.51 -0.5
2,873,949 + HP15_2720 0.65 -0.7
2,873,954 + HP15_2720 0.66 -1.6
2,873,954 + HP15_2720 0.66 +1.3
2,873,954 + HP15_2720 0.66 -0.0
2,874,076 + +0.5
2,874,076 + -0.6
2,874,079 - -0.0
2,874,087 + -0.1
2,874,095 - +0.1
2,874,264 + -0.1
2,874,546 + HP15_2721 0.25 +0.5
2,874,637 - HP15_2721 0.34 -0.2
2,874,682 + HP15_2721 0.38 +0.9
2,874,712 + HP15_2721 0.41 -0.1
2,874,762 - HP15_2721 0.46 +0.1
2,874,800 + HP15_2721 0.50 +0.3
2,874,836 + HP15_2721 0.53 -0.4
2,874,943 - HP15_2721 0.63 -0.2
2,874,998 + HP15_2721 0.68 +0.5
2,875,054 - HP15_2721 0.74 +0.5
2,875,120 - HP15_2721 0.80 +0.1

Or see this region's nucleotide sequence